Basic information
Locus name	AT3G50210
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation:flavonoid biosynthesis
Effect for Senescence	Unclear
Gene Description	2-Oxoacid-dependent oxidase. Upregulated in senescent leaves.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process oxidation-reduction process molecular function iron ion binding oxidoreductase activity
Sequence	AT3G50210.1 | Genomic | mRNA | CDS | Protein AT3G50210.2 | Genomic | mRNA | CDS | Protein AT3G50210.3 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G50210.1  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -24.0 kcal/mol  p-value: 0.029913  position:  640  target 5' G                A     G 3'             GAGUUUAA AGAGUUG UGGAG              UUCAAGUU UUUCGAC ACCUU   miRNA  3'          C               5'  target: AT3G50210.2  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -24.0 kcal/mol  p-value: 0.028200  position:  577  target 5' G                A     G 3'             GAGUUUAA AGAGUUG UGGAG              UUCAAGUU UUUCGAC ACCUU   miRNA  3'          C               5'  target: AT3G50210.3  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -24.0 kcal/mol  p-value: 0.026944  position:  529  target 5' G                A     G 3'             GAGUUUAA AGAGUUG UGGAG              UUCAAGUU UUUCGAC ACCUU   miRNA  3'          C               5'
Ortholog Group
Ortholog Groups: OG5_126909	Accession Taxon NP_001030834 ( AT3G50210 ) Arabidopsis thaliana NP_001077664 Arabidopsis thaliana NP_174753 Arabidopsis thaliana NP_175233 Arabidopsis thaliana NP_177965 Arabidopsis thaliana NP_190233 Arabidopsis thaliana NP_190531 Arabidopsis thaliana NP_190532 Arabidopsis thaliana NP_566930 Arabidopsis thaliana NP_680716 Arabidopsis thaliana NP_849544 Arabidopsis thaliana NP_974407 Arabidopsis thaliana 187819 Chlamydomonas reinhardtii ACO61595 Micromonas sp. RCC299 ACO64040 Micromonas sp. RCC299 ACO64444 Micromonas sp. RCC299 ACO64998 Micromonas sp. RCC299 ACO65572 Micromonas sp. RCC299 NP_001042255 Oryza sativa Japonica Group NP_001062658 Oryza sativa Japonica Group NP_001062669 Oryza sativa Japonica Group NP_001065100 Oryza sativa Japonica Group NP_001065102 Oryza sativa Japonica Group e_gw1.12.00.235.1 Ostreococcus tauri e_gw1.13.00.313.1 Ostreococcus tauri estExt_Genewise1.C_1910057 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1800040 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3270021 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_500017 Physcomitrella patens subsp. patens 27401.m000275 Ricinus communis 29644.m000184 Ricinus communis 29912.m005445 Ricinus communis 36270.m000025 Ricinus communis e_gw1.1.524.1 Thalassiosira pseudonana CCMP1335 e_gw1.7.272.1 Thalassiosira pseudonana CCMP1335 XP_002949877 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10209 6.2E-241 1 332 No hit NA SUPERFAMILY SSF51197 3.3E-87 3 329 No hit NA Pfam PF14226 4.3E-34 8 137 IPR026992 Non-haem dioxygenase N-terminal domain PRINTS PR00682 1.9E-10 38 55 IPR002283 Isopenicillin N synthase PRINTS PR00682 1.9E-10 158 174 IPR002283 Isopenicillin N synthase ProSiteProfiles PS51471 9.9 182 287 IPR005123 Oxoglutarate/iron-dependent dioxygenase Pfam PF03171 3.5E-19 186 286 IPR005123 Oxoglutarate/iron-dependent dioxygenase PRINTS PR00682 1.9E-10 247 273 IPR002283 Isopenicillin N synthase