Basic information
Locus name	AT2G47040
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism:Pectinesterase
Effect for Senescence	Unclear
Gene Description	Pectinesterase family gene. Upregulated in senescent leaves.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process cell wall modification cellular component cell wall molecular function enzyme inhibitor activity pectinesterase activity
Pathway	KEGG map00040 (EC 3.1.1.11) map00500 (EC 3.1.1.11) MetaCyc PWY-1081
Sequence	AT2G47040.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_164506	Accession Taxon NP_182226 Arabidopsis thaliana NP_182227 ( AT2G47040 ) Arabidopsis thaliana NP_191776 Arabidopsis thaliana 29889.m003396 Ricinus communis 30116.m000389 Ricinus communis 30116.m000390 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31707 3.3E-238 1 595 No hit NA TIGRFAM TIGR01614 1.6E-10 10 188 IPR006501 Pectinesterase inhibitor SMART SM00856 1.7E-32 36 186 IPR006501 Pectinesterase inhibitor Pfam PF04043 1.4E-20 38 186 IPR006501 Pectinesterase inhibitor SUPERFAMILY SSF101148 5.2E-21 39 190 IPR006501 Pectinesterase inhibitor SUPERFAMILY SSF51126 9.6E-96 280 593 IPR011050 Pectin lyase fold/virulence factor Pfam PF01095 1.7E-111 284 578 IPR000070 Pectinesterase, catalytic ProSitePatterns PS00800 NA 308 327 IPR018040 Pectinesterase, active site ProSitePatterns PS00503 NA 429 438 IPR018040 Pectinesterase, active site
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787