Basic information
Locus name	AT3G57510
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism:polygalacturonase
Effect for Senescence	Unclear
Gene Description	Endo-polygalacturonase (ADPG1)
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process carbohydrate metabolic process molecular function polygalacturonase activity
Sequence	AT3G57510.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130068	Accession Taxon NP_001078162 Arabidopsis thaliana NP_175244 Arabidopsis thaliana NP_191310 ( AT3G57510 ) Arabidopsis thaliana NP_192098 Arabidopsis thaliana NP_194963 Arabidopsis thaliana NP_194964 Arabidopsis thaliana NP_195292 Arabidopsis thaliana NP_197222 Arabidopsis thaliana NP_198105 Arabidopsis thaliana NP_199296 Arabidopsis thaliana NP_199297 Arabidopsis thaliana NP_563654 Arabidopsis thaliana NP_565232 Arabidopsis thaliana NP_566524 Arabidopsis thaliana NP_680757 Arabidopsis thaliana NP_850359 Arabidopsis thaliana NP_001042805 Oryza sativa Japonica Group NP_001055086 Oryza sativa Japonica Group e_gw1.104.72.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_170205 Physcomitrella patens subsp. patens 29761.m000417 Ricinus communis 29848.m004639 Ricinus communis 29889.m003362 Ricinus communis 30076.m004591 Ricinus communis 30128.m008960 Ricinus communis 48595.m000013 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31375 7.8E-192 1 428 No hit NA SUPERFAMILY SSF51126 7.1E-119 64 430 IPR011050 Pectin lyase fold/virulence factor Pfam PF00295 4.1E-113 95 421 IPR000743 Glycoside hydrolase, family 28 SMART SM00710 12.0 223 249 IPR006626 Parallel beta-helix repeat SMART SM00710 950.0 250 271 IPR006626 Parallel beta-helix repeat ProSitePatterns PS00502 NA 280 293 IPR000743 Glycoside hydrolase, family 28 SMART SM00710 1,100.0 303 324 IPR006626 Parallel beta-helix repeat SMART SM00710 1,700.0 332 353 IPR006626 Parallel beta-helix repeat SMART SM00710 5,800.0 398 420 IPR006626 Parallel beta-helix repeat
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787