Basic information
Locus name	AT5G62540
Alias	UBC3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ubiquitin-conjugating enzyme 3 (UBC3); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function acid-amino acid ligase activity
Pathway
Sequence	AT5G62540.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127153	Accession Taxon NP_563951 Arabidopsis thaliana NP_565289 Arabidopsis thaliana NP_568956 ( AT5G62540 ) Arabidopsis thaliana NP_973825 Arabidopsis thaliana CMK253C Cyanidioschyzon merolae strain 10D 132836 Chlamydomonas reinhardtii NP_113132 Guillardia theta ACO66643 Micromonas sp. RCC299 NP_001051522 Oryza sativa Japonica Group NP_001054819 Oryza sativa Japonica Group NP_001058973 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_14.00010161 Ostreococcus tauri estExt_Genewise1.C_910072 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_910042 Physcomitrella patens subsp. patens 29736.m002026 Ricinus communis estExt_fgenesh1_pm.C_chr_120019 Thalassiosira pseudonana CCMP1335 XP_002956171 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24067 1.4E-105 1 149 No hit NA SUPERFAMILY SSF54495 1.1E-61 1 149 IPR016135 Ubiquitin-conjugating enzyme/RWD-like ProSiteProfiles PS50127 46.9 7 139 IPR000608 Ubiquitin-conjugating enzyme, E2 SMART SM00212 3.4E-66 7 150 No hit NA Pfam PF00179 5.7E-51 8 142 IPR000608 Ubiquitin-conjugating enzyme, E2 ProSitePatterns PS00183 NA 77 92 IPR023313 Ubiquitin-conjugating enzyme, active site