Basic information
Locus name	AT5G53300
Alias	UBC10
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ubiquitin-conjugating enzyme 10 (UBC10); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function acid-amino acid ligase activity
Pathway
Sequence	AT5G53300.1 | Genomic | mRNA | CDS | Protein AT5G53300.2 | Genomic | mRNA | CDS | Protein AT5G53300.3 | Genomic | mRNA | CDS | Protein AT5G53300.4 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126877	Accession Taxon NP_001031228 Arabidopsis thaliana NP_564828 Arabidopsis thaliana NP_565391 Arabidopsis thaliana NP_566331 Arabidopsis thaliana NP_567791 Arabidopsis thaliana NP_568788 ( AT5G53300 ) Arabidopsis thaliana NP_568835 Arabidopsis thaliana NP_849462 Arabidopsis thaliana NP_851114 Arabidopsis thaliana NP_851115 Arabidopsis thaliana NP_851181 Arabidopsis thaliana NP_851198 Arabidopsis thaliana CMD152C Cyanidioschyzon merolae strain 10D 152525 Chlamydomonas reinhardtii NP_113070 Guillardia theta NP_113222 Guillardia theta NP_113233 Guillardia theta NP_113393 Guillardia theta NP_113544 Guillardia theta ACO66863 Micromonas sp. RCC299 NP_001043763 Oryza sativa Japonica Group NP_001045711 Oryza sativa Japonica Group NP_001046486 Oryza sativa Japonica Group NP_001054191 Oryza sativa Japonica Group NP_001062791 Oryza sativa Japonica Group e_gw1.14.00.297.1 Ostreococcus tauri estExt_Genewise1.C_5330009 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_650087 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_340032 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_690032 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_690085 Physcomitrella patens subsp. patens 28049.m000299 Ricinus communis 28128.m000154 Ricinus communis 29728.m000818 Ricinus communis 30190.m010790 Ricinus communis estExt_fgenesh1_pg.C_chr_40748 Thalassiosira pseudonana CCMP1335 XP_002949062 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24068 1.6E-114 1 147 No hit NA SUPERFAMILY SSF54495 2.4E-66 2 147 IPR016135 Ubiquitin-conjugating enzyme/RWD-like ProSiteProfiles PS50127 48.4 4 136 IPR000608 Ubiquitin-conjugating enzyme, E2 SMART SM00212 1.3E-79 4 147 No hit NA Pfam PF00179 7.9E-53 5 141 IPR000608 Ubiquitin-conjugating enzyme, E2 ProSitePatterns PS00183 NA 74 89 IPR023313 Ubiquitin-conjugating enzyme, active site