Leaf Senescence DataBase

Basic information

Locus name

AT4G24690

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein; FUNCTIONS IN: zinc ion binding;

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

Sequence

AT4G24690.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_163151

Accession	Taxon
NP_194200 ( AT4G24690 )	Arabidopsis thaliana
NP_001047302	Oryza sativa Japonica Group
NP_001053083	Oryza sativa Japonica Group
estExt_Genewise1.C_800125	Physcomitrella patens subsp. patens
30147.m013869	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR20930	4.9E-160	2	704	No hit	NA
SUPERFAMILY	SSF54277	7.0E-12	5	88	No hit	NA
SMART	SM00666	4.3E-14	7	92	IPR000270	Phox/Bem1p
Pfam	PF00564	2.5E-9	9	89	IPR000270	Phox/Bem1p
SUPERFAMILY	SSF57850	5.2E-14	281	340	No hit	NA
ProSiteProfiles	PS50135	12.2	285	332	IPR000433	Zinc finger, ZZ-type
SMART	SM00291	4.4E-5	285	330	IPR000433	Zinc finger, ZZ-type
Pfam	PF00569	1.1E-7	286	320	IPR000433	Zinc finger, ZZ-type
SUPERFAMILY	SSF46934	3.5E-8	661	698	IPR009060	UBA-like
Pfam	PF00627	5.3E-5	664	697	IPR000449	Ubiquitin-associated/translation elongation factor EF1B, N-terminal

Subcellular Localization

Localization 1
	Localization	other cytoplasmic components
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809

Localization 2
	Localization	cytoplasm
	Evidence	Localization with GFP-ORF fusion protein (GFP:cDNA)
	Pubmed ID	15610358

Localization 3
	Localization	nucleus
	Evidence	SUBAcon
	Pubmed ID	23180787