Basic information
Locus name	AT4G05050
Alias	UBQ11
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	UBIQUITIN 11 (UBQ11); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, protein modification process, ubiquitin-dependent protein catabolic process;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT4G05050.1 | Genomic | mRNA | CDS | Protein AT4G05050.2 | Genomic | mRNA | CDS | Protein AT4G05050.3 | Genomic | mRNA | CDS | Protein AT4G05050.4 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126703	Accession Taxon NP_001031585 Arabidopsis thaliana NP_001031824 Arabidopsis thaliana NP_001078353 Arabidopsis thaliana NP_001118922 Arabidopsis thaliana NP_001118936 ( AT4G05050 ) Arabidopsis thaliana NP_176714 Arabidopsis thaliana NP_565812 Arabidopsis thaliana NP_566357 Arabidopsis thaliana NP_567247 Arabidopsis thaliana NP_567286 Arabidopsis thaliana NP_567291 Arabidopsis thaliana NP_568112 Arabidopsis thaliana NP_568397 Arabidopsis thaliana NP_849291 Arabidopsis thaliana NP_849292 Arabidopsis thaliana NP_849299 Arabidopsis thaliana NP_849300 Arabidopsis thaliana NP_849301 Arabidopsis thaliana NP_851029 Arabidopsis thaliana NP_974516 Arabidopsis thaliana CMK296C Cyanidioschyzon merolae strain 10D 140045 Chlamydomonas reinhardtii 196236 Chlamydomonas reinhardtii ACO67790 Micromonas sp. RCC299 ACO69433 Micromonas sp. RCC299 NP_001045980 Oryza sativa Japonica Group NP_001053957 Oryza sativa Japonica Group NP_001058338 Oryza sativa Japonica Group NP_001058378 Oryza sativa Japonica Group NP_001059668 Oryza sativa Japonica Group NP_001063337 Oryza sativa Japonica Group estExt_fgenesh1_pm.C_Chr_12.00010021 Ostreococcus tauri estExt_Genewise1.C_170154 Physcomitrella patens subsp. patens estExt_Genewise1.C_2270098 Physcomitrella patens subsp. patens estExt_Genewise1.C_460139 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_170152 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3510013 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_175000036 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_88000082 Physcomitrella patens subsp. patens fgenesh2_pm.scaffold_72000009 Physcomitrella patens subsp. patens 30169.m006323 Ricinus communis XP_002953480 Volvox carteri f. nagariensis XP_002955196 Volvox carteri f. nagariensis XP_002957068 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10666 5.8E-151 1 153 No hit NA ProSiteProfiles PS50053 30.5 1 76 IPR019955 Ubiquitin supergroup SMART SM00213 3.0E-35 1 72 IPR000626 Ubiquitin SUPERFAMILY SSF54236 3.1E-34 1 76 No hit NA Pfam PF00240 2.1E-34 6 74 IPR000626 Ubiquitin PRINTS PR00348 5.2E-39 11 31 IPR019956 Ubiquitin subgroup ProSitePatterns PS00299 NA 27 52 IPR019954 Ubiquitin conserved site PRINTS PR00348 5.2E-39 32 52 IPR019956 Ubiquitin subgroup PRINTS PR00348 5.2E-39 53 74 IPR019956 Ubiquitin subgroup SUPERFAMILY SSF54236 6.9E-35 75 152 No hit NA ProSiteProfiles PS50053 30.5 77 152 IPR019955 Ubiquitin supergroup SMART SM00213 3.0E-35 77 148 IPR000626 Ubiquitin Pfam PF00240 2.1E-34 82 150 IPR000626 Ubiquitin ProSitePatterns PS00299 NA 103 128 IPR019954 Ubiquitin conserved site
Subcellular Localization
Localization 1 Localization cytosol Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization nucleus Evidence SUBAcon Pubmed ID 23180787