Basic information
Locus name	AT5G28237
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	tryptophan synthase, beta subunit, putative; FUNCTIONS IN: pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity; INVOLVED IN: tryptophan biosynthetic process, metabolic process, tryptophan metabolic process;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process tryptophan biosynthetic process molecular function tryptophan synthase activity
Pathway	KEGG map00260 (EC 4.2.1.20) map00400 (EC 4.2.1.20)
Sequence	AT5G28237.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128016	Accession Taxon NP_194437 Arabidopsis thaliana NP_198669 Arabidopsis thaliana NP_200292 Arabidopsis thaliana NP_974844 ( AT5G28237 ) Arabidopsis thaliana CMJ191C Cyanidioschyzon merolae strain 10D 9823 Chlamydomonas reinhardtii ACO60896 Micromonas sp. RCC299 ACO69275 Micromonas sp. RCC299 NP_001060945 Oryza sativa Japonica Group e_gw1.07.00.162.1 Ostreococcus tauri e_gw1.3.135.1 Physcomitrella patens subsp. patens e_gw1.48.132.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_270122 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_12000053 Physcomitrella patens subsp. patens 29842.m003632 Ricinus communis 29980.m000183 Ricinus communis estExt_fgenesh1_pg.C_chr_200077 Thalassiosira pseudonana CCMP1335 XP_002954118 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10314 6.9E-225 35 458 No hit NA PIRSF PIRSF001413 2.1E-166 50 461 IPR023026 Tryptophan synthase beta chain/beta chain-like Hamap MF_00133 46.2 65 459 IPR023026 Tryptophan synthase beta chain/beta chain-like SUPERFAMILY SSF53686 4.4E-126 68 456 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily TIGRFAM TIGR00263 2.8E-157 70 457 IPR006654 Tryptophan synthase, beta chain Pfam PF00291 8.1E-37 138 443 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily ProSitePatterns PS00168 NA 152 166 IPR006653 Tryptophan synthase, beta chain, conserved site
Subcellular Localization
Localization	mitochondrion
Evidence	SUBAcon
Pubmed ID	23180787