Home

Browse
  Species Table
  Species Tree
  Mutant
  Mutant Arabidopsis Seeds
  Mutant Rice Seeds
  Sen-ASVs
  Phenotype
  Chlorophyll Degradation
  Stay-green QTL
  Ecotype
  Public Transcriptomic
  Sen-smallRNA
  SAGs in Poplar
  SAGs in Kalanchoe serrata
  Sen-TF ChIP/DAP-Seq
  SAP in Arabidopsis
  SAP in Soybean
  Targets of Sen-AtlncRNAs
  SLAGs and Mutants
  Seed-Storage Times

Search
  Text Search
  BLAST Search

Help
  User Guide
  FAQs
  How to Cite

Download

Links
About
Basic information   
Locus name AT1G15520
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:ABC transporter
Effect for SenescenceUnclear
Gene DescriptionABC transporter family protein
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
cellular component
molecular function
SequenceAT1G15520.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction      
Details
target: AT1G15520.1 
miRNA: ath-miR775
miRNA: ath-miR775
mfe: -26.6 kcal/mol 
p-value: 0.053614 

position:  2307 
target 5' U   A   A             C 3' 
           UGG CAC GCUGGA GUCGAG  
           ACC GUG CGAUCU UAGCUU  
miRNA  3'         A      G        5' 
Ortholog Group      
Ortholog Groups: OG5_126574
AccessionTaxon
NP_172973Arabidopsis thaliana
NP_173005 ( AT1G15520 ) Arabidopsis thaliana
NP_176196Arabidopsis thaliana
NP_176867Arabidopsis thaliana
NP_178241Arabidopsis thaliana
NP_180259Arabidopsis thaliana
NP_180555Arabidopsis thaliana
NP_181179Arabidopsis thaliana
NP_181265Arabidopsis thaliana
NP_190916Arabidopsis thaliana
NP_193258Arabidopsis thaliana
NP_194472Arabidopsis thaliana
NP_564383Arabidopsis thaliana
NP_566543Arabidopsis thaliana
NP_680692Arabidopsis thaliana
NP_680693Arabidopsis thaliana
NP_680694Arabidopsis thaliana
NP_683617Arabidopsis thaliana
NP_849921Arabidopsis thaliana
NP_849922Arabidopsis thaliana
NP_973392Arabidopsis thaliana
CMD134CCyanidioschyzon merolae strain 10D
CMD135CCyanidioschyzon merolae strain 10D
CMO130CCyanidioschyzon merolae strain 10D
CMR291CCyanidioschyzon merolae strain 10D
CMS467CCyanidioschyzon merolae strain 10D
103211Chlamydomonas reinhardtii
115842Chlamydomonas reinhardtii
131711Chlamydomonas reinhardtii
147235Chlamydomonas reinhardtii
150517Chlamydomonas reinhardtii
169525Chlamydomonas reinhardtii
60710Chlamydomonas reinhardtii
79831Chlamydomonas reinhardtii
ACO61491Micromonas sp. RCC299
ACO65667Micromonas sp. RCC299
ACO66759Micromonas sp. RCC299
ACO67072Micromonas sp. RCC299
ACO69748Micromonas sp. RCC299
NP_001041878Oryza sativa Japonica Group
NP_001042955Oryza sativa Japonica Group
NP_001043538Oryza sativa Japonica Group
NP_001043539Oryza sativa Japonica Group
NP_001043541Oryza sativa Japonica Group
NP_001044111Oryza sativa Japonica Group
NP_001046259Oryza sativa Japonica Group
NP_001046678Oryza sativa Japonica Group
NP_001057850Oryza sativa Japonica Group
NP_001059813Oryza sativa Japonica Group
NP_001061077Oryza sativa Japonica Group
NP_001061702Oryza sativa Japonica Group
NP_001066875Oryza sativa Japonica Group
NP_001068174Oryza sativa Japonica Group
1400010200Ostreococcus tauri
e_gw1.04.00.113.1Ostreococcus tauri
e_gw1.10.00.120.1Ostreococcus tauri
gw1.07.00.7.1Ostreococcus tauri
gw1.10.00.71.1Ostreococcus tauri
e_gw1.15.314.1Physcomitrella patens subsp. patens
e_gw1.160.7.1Physcomitrella patens subsp. patens
e_gw1.169.25.1Physcomitrella patens subsp. patens
e_gw1.170.3.1Physcomitrella patens subsp. patens
e_gw1.23.7.1Physcomitrella patens subsp. patens
e_gw1.255.7.1Physcomitrella patens subsp. patens
e_gw1.3.69.1Physcomitrella patens subsp. patens
e_gw1.36.207.1Physcomitrella patens subsp. patens
e_gw1.65.47.1Physcomitrella patens subsp. patens
e_gw1.66.222.1Physcomitrella patens subsp. patens
e_gw1.72.203.1Physcomitrella patens subsp. patens
e_gw1.72.206.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_3750035Physcomitrella patens subsp. patens
estExt_Genewise1.C_590033Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_120016Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_150083Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1800028Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2700057Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_536000002Physcomitrella patens subsp. patens
27496.m000097Ricinus communis
27985.m000850Ricinus communis
28219.m000091Ricinus communis
29333.m001087Ricinus communis
29588.m000881Ricinus communis
29588.m000882Ricinus communis
29588.m000883Ricinus communis
29588.m000884Ricinus communis
29681.m001339Ricinus communis
29738.m001021Ricinus communis
29766.m000121Ricinus communis
29791.m000550Ricinus communis
29791.m000551Ricinus communis
29827.m002659Ricinus communis
29848.m004673Ricinus communis
29889.m003385Ricinus communis
29901.m000408Ricinus communis
29912.m005565Ricinus communis
29912.m005566Ricinus communis
29912.m005567Ricinus communis
29912.m005568Ricinus communis
29912.m005569Ricinus communis
29932.m000597Ricinus communis
29953.m000435Ricinus communis
30128.m008881Ricinus communis
30131.m006867Ricinus communis
30146.m003511Ricinus communis
30146.m003512Ricinus communis
30146.m003513Ricinus communis
30146.m003514Ricinus communis
e_gw1.23x33.5.1Thalassiosira pseudonana CCMP1335
estExt_Genewise1.C_chr_30509Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_17000019Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_22000026Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_3000068Thalassiosira pseudonana CCMP1335
XP_002947559Volvox carteri f. nagariensis
XP_002952574Volvox carteri f. nagariensis
XP_002955315Volvox carteri f. nagariensis
XP_002959059Volvox carteri f. nagariensis
XP_002959452Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
ProSiteProfilesPS5089314.9154427IPR003439ABC transporter-like
SUPERFAMILYSSF525401.2E-31165426IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003821.4E-6179422IPR003593AAA+ ATPase domain
PfamPF000052.1E-6194351IPR003439ABC transporter-like
PANTHERPTHR192410.03801423No hitNA
PfamPF010611.5E-41506718IPR013525ABC-2 type transporter
PfamPF083708.3E-27723786IPR013581Plant PDR ABC transporter associated
ProSiteProfilesPS5089314.18251077IPR003439ABC transporter-like
SUPERFAMILYSSF525402.1E-368481060IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003821.1E-108621054IPR003593AAA+ ATPase domain
PfamPF000059.4E-98771005IPR003439ABC transporter-like
PfamPF010611.1E-5411501364IPR013525ABC-2 type transporter
Subcellular Localization   
Localizationplasma membrane
EvidenceSUBAcon
Pubmed ID23180787