Basic information
Locus name	AT5G08560
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT5G08560.1 | Genomic | mRNA | CDS | Protein AT5G08560.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129140	Accession Taxon NP_001078546 ( AT5G08560 ) Arabidopsis thaliana NP_196473 Arabidopsis thaliana NP_199205 Arabidopsis thaliana CMS241C Cyanidioschyzon merolae strain 10D ACO64831 Micromonas sp. RCC299 NP_001046605 Oryza sativa Japonica Group NP_001064796 Oryza sativa Japonica Group e_gw1.136.36.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_123000092 Physcomitrella patens subsp. patens 29885.m000140 Ricinus communis 30131.m007289 Ricinus communis XP_002952977 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22838 2.7E-171 15 571 No hit NA ProSiteProfiles PS50896 9.3 64 96 IPR006594 LisH dimerisation motif SMART SM00667 0.0 64 96 IPR006594 LisH dimerisation motif ProSiteProfiles PS50897 12.0 97 154 IPR006595 CTLH, C-terminal LisH motif SMART SM00668 4.1E-10 97 154 IPR006595 CTLH, C-terminal LisH motif SUPERFAMILY SSF50978 1.2E-65 262 559 IPR017986 WD40-repeat-containing domain SMART SM00320 2.0E-7 263 302 IPR001680 WD40 repeat Pfam PF00400 8.6E-8 268 302 IPR001680 WD40 repeat ProSiteProfiles PS50082 13.0 270 311 IPR001680 WD40 repeat ProSiteProfiles PS50294 41.5 270 569 IPR017986 WD40-repeat-containing domain PRINTS PR00320 2.1E-5 289 303 IPR020472 G-protein beta WD-40 repeat ProSitePatterns PS00678 NA 289 303 IPR019775 WD40 repeat, conserved site SMART SM00320 1.7E-5 308 347 IPR001680 WD40 repeat Pfam PF00400 9.3E-5 311 347 IPR001680 WD40 repeat ProSiteProfiles PS50082 13.1 315 356 IPR001680 WD40 repeat SMART SM00320 0.7 350 389 IPR001680 WD40 repeat PRINTS PR00320 2.1E-5 376 390 IPR020472 G-protein beta WD-40 repeat ProSitePatterns PS00678 NA 376 390 IPR019775 WD40 repeat, conserved site SMART SM00320 0.4 391 431 IPR001680 WD40 repeat SMART SM00320 13.0 433 471 IPR001680 WD40 repeat SMART SM00320 0.6 475 517 IPR001680 WD40 repeat SMART SM00320 2.8E-11 520 560 IPR001680 WD40 repeat Pfam PF00400 3.9E-12 521 559 IPR001680 WD40 repeat ProSiteProfiles PS50082 14.4 527 569 IPR001680 WD40 repeat PRINTS PR00320 2.1E-5 547 561 IPR020472 G-protein beta WD-40 repeat