Basic information
Locus name	AT5G16830
Alias	SYP21
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	SYNTAXIN OF PLANTS 21 (SYP21); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport, Golgi to vacuole transport, late endosome to vacuole transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network transport vesicle, late endosome, membrane;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process intracellular protein transport cellular component membrane molecular function SNAP receptor activity protein binding
Pathway	Reactome REACT_11184
Sequence	AT5G16830.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128082	Accession Taxon NP_197185 ( AT5G16830 ) Arabidopsis thaliana NP_568671 Arabidopsis thaliana ACO64912 Micromonas sp. RCC299 NP_001042620 Oryza sativa Japonica Group gw1.12.00.272.1 Ostreococcus tauri e_gw1.38.273.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_530012 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_760016 Physcomitrella patens subsp. patens 30054.m000797 Ricinus communis 30073.m002272 Ricinus communis 30131.m006944 Ricinus communis fgenesh1_pg.C_chr_16a000122 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR19957 3.2E-158 15 279 No hit NA SMART SM00503 1.9E-28 21 134 IPR006011 Syntaxin, N-terminal SUPERFAMILY SSF47661 6.3E-37 31 241 IPR010989 t-SNARE Pfam PF00804 2.2E-6 33 119 IPR006011 Syntaxin, N-terminal SMART SM00397 4.2E-18 181 248 IPR000727 Target SNARE coiled-coil domain ProSiteProfiles PS50192 18.4 186 248 IPR000727 Target SNARE coiled-coil domain Pfam PF05739 5.4E-18 191 253 IPR000727 Target SNARE coiled-coil domain ProSitePatterns PS00914 NA 192 231 IPR006012 Syntaxin/epimorphin, conserved site
Subcellular Localization
Localization 1 Localization Golgi apparatus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization vacuole,golgi Evidence SUBAcon Pubmed ID 23180787