Basic information
Locus name	AT3G47480
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:Calcium
Effect for Senescence	Unclear
Gene Description	Calcium-binding EF hand
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function calcium ion binding
Sequence	AT3G47480.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10891 6.6E-49 1 182 No hit NA Coils Coil NA 80 101 No hit NA ProSiteProfiles PS50222 15.7 112 147 IPR002048 EF-hand domain SUPERFAMILY SSF47473 2.2E-19 113 181 No hit NA SMART SM00054 1.2E-6 116 144 IPR002048 EF-hand domain Pfam PF13499 1.5E-14 117 178 IPR011992 EF-hand-like domain ProSitePatterns PS00018 NA 125 137 IPR018247 EF-Hand 1, calcium-binding site ProSiteProfiles PS50222 10.7 149 183 IPR002048 EF-hand domain SMART SM00054 4.9E-4 153 181 IPR002048 EF-hand domain ProSitePatterns PS00018 NA 162 174 IPR018247 EF-Hand 1, calcium-binding site