Basic information   
Locus name AT5G39670
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:Calcium
Effect for SenescenceUnclear
Gene DescriptionCalcium-binding EF hand
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
molecular function
SequenceAT5G39670.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_177852
AccessionTaxon
NP_189542Arabidopsis thaliana
NP_568568 ( AT5G39670 ) Arabidopsis thaliana
NP_001068223Oryza sativa Japonica Group
28838.m000248Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR108911.9E-5885202No hitNA
ProSiteProfilesPS502225.485106IPR002048EF-hand domain
SUPERFAMILYSSF474734.1E-1685199No hitNA
ProSiteProfilesPS5022214.6132167IPR002048EF-hand domain
SMARTSM000540.0136164IPR002048EF-hand domain
PfamPF134996.7E-11137199IPR011992EF-hand-like domain
ProSitePatternsPS00018NA145157IPR018247EF-Hand 1, calcium-binding site
ProSiteProfilesPS502227.4170204IPR002048EF-hand domain
SMARTSM000543.6174202IPR002048EF-hand domain