Basic information
Locus name	AT2G33080
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:PPI
Effect for Senescence	Unclear
Gene Description	Leucine-rich repeat family protein. Upregulated in senescent leaves.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding
Sequence	AT2G33080.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130149	Accession Taxon NP_001154519 Arabidopsis thaliana NP_001154652 Arabidopsis thaliana NP_175139 Arabidopsis thaliana NP_175225 Arabidopsis thaliana NP_177295 Arabidopsis thaliana NP_177296 Arabidopsis thaliana NP_179112 Arabidopsis thaliana NP_180114 Arabidopsis thaliana NP_180825 Arabidopsis thaliana NP_180827 Arabidopsis thaliana NP_180861 Arabidopsis thaliana NP_180864 Arabidopsis thaliana NP_180865 Arabidopsis thaliana NP_180867 ( AT2G33080 ) Arabidopsis thaliana NP_187187 Arabidopsis thaliana NP_187188 Arabidopsis thaliana NP_187216 Arabidopsis thaliana NP_187217 Arabidopsis thaliana NP_187712 Arabidopsis thaliana NP_187719 Arabidopsis thaliana NP_188941 Arabidopsis thaliana NP_188952 Arabidopsis thaliana NP_188953 Arabidopsis thaliana NP_189134 Arabidopsis thaliana NP_189137 Arabidopsis thaliana NP_189138 Arabidopsis thaliana NP_189531 Arabidopsis thaliana NP_193117 Arabidopsis thaliana NP_193118 Arabidopsis thaliana NP_193124 Arabidopsis thaliana NP_197963 Arabidopsis thaliana NP_198058 Arabidopsis thaliana NP_198833 Arabidopsis thaliana NP_566757 Arabidopsis thaliana NP_567412 Arabidopsis thaliana NP_849957 Arabidopsis thaliana 142748 Chlamydomonas reinhardtii NP_001041930 Oryza sativa Japonica Group NP_001042079 Oryza sativa Japonica Group NP_001042089 Oryza sativa Japonica Group NP_001042091 Oryza sativa Japonica Group NP_001042092 Oryza sativa Japonica Group NP_001042093 Oryza sativa Japonica Group NP_001042098 Oryza sativa Japonica Group NP_001042100 Oryza sativa Japonica Group NP_001052528 Oryza sativa Japonica Group NP_001053102 Oryza sativa Japonica Group NP_001066404 Oryza sativa Japonica Group NP_001066407 Oryza sativa Japonica Group NP_001066419 Oryza sativa Japonica Group 29601.m000437 Ricinus communis 29601.m000438 Ricinus communis 29836.m000564 Ricinus communis 29848.m004515 Ricinus communis 29848.m004518 Ricinus communis thaps1_ua_kg.chr_4000259 Thalassiosira pseudonana CCMP1335 XP_002954213 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF52058 1.0E-46 57 381 No hit NA PANTHER PTHR24420 3.1E-134 83 688 No hit NA SMART SM00369 70.0 99 123 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13855 1.7E-9 101 161 No hit NA SMART SM00365 35.0 124 150 No hit NA SMART SM00369 95.0 124 147 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 68.0 148 167 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13516 1.1 171 191 No hit NA SMART SM00369 92.0 171 195 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13516 0.3 266 280 No hit NA SMART SM00365 180.0 266 286 No hit NA SMART SM00369 13.0 266 291 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13855 6.5E-8 294 350 No hit NA SMART SM00365 130.0 314 329 No hit NA SMART SM00369 41.0 314 338 IPR003591 Leucine-rich repeat, typical subtype SUPERFAMILY SSF52058 6.8E-44 383 560 No hit NA SMART SM00369 27.0 429 453 IPR003591 Leucine-rich repeat, typical subtype SMART SM00365 770.0 453 479 No hit NA Pfam PF13855 1.3E-8 455 514 No hit NA SMART SM00369 220.0 501 526 IPR003591 Leucine-rich repeat, typical subtype SUPERFAMILY SSF52058 6.8E-44 607 689 No hit NA SMART SM00365 410.0 649 672 No hit NA SMART SM00369 320.0 650 673 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.0 652 673 IPR001611 Leucine-rich repeat