Basic information
Locus name	AT4G30600
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process GTP catabolic process SRP-dependent cotranslational protein targeting to membrane intracellular protein transport cellular component signal recognition particle receptor complex molecular function GTP binding GTPase activity signal recognition particle binding
Pathway	Reactome REACT_15380
Sequence	AT4G30600.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G30600.1  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -35.1 kcal/mol  p-value: 0.000097  position: 2012  target 5' C                   C  3'             UUCAUCAUCAUCAUCAUCA                 AAGUAGUAGUAGUAGUAGU      miRNA  3' A                   A  5'
Ortholog Group
Ortholog Groups: OG5_126932	Accession Taxon NP_194789 ( AT4G30600 ) Arabidopsis thaliana NP_566056 Arabidopsis thaliana CME016C Cyanidioschyzon merolae strain 10D CMN250C Cyanidioschyzon merolae strain 10D 105469 Chlamydomonas reinhardtii 195482 Chlamydomonas reinhardtii ACO64079 Micromonas sp. RCC299 ACO65457 Micromonas sp. RCC299 NP_001045451 Oryza sativa Japonica Group NP_001062057 Oryza sativa Japonica Group e_gw1.02.00.156.1 Ostreococcus tauri e_gw1.07.00.289.1 Ostreococcus tauri e_gw1.98.172.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_290000027 Physcomitrella patens subsp. patens fgenesh2_pg.scaffold_92000006 Physcomitrella patens subsp. patens 29687.m000580 Ricinus communis 30174.m008977 Ricinus communis e_gw1.11a.86.1 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_13000118 Thalassiosira pseudonana CCMP1335 XP_002947792 Volvox carteri f. nagariensis XP_002949444 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF64356 1.3E-32 1 123 IPR011012 Longin-like domain PANTHER PTHR11564 4.3E-272 2 634 No hit NA Pfam PF04086 9.6E-70 28 312 IPR007222 Signal recognition particle receptor, alpha subunit, N-terminal SMART SM00963 0.0 325 407 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle SUPERFAMILY SSF47364 6.5E-12 327 409 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle Pfam PF02881 2.3E-6 328 396 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle SUPERFAMILY SSF52540 4.6E-41 425 633 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 6.3E-7 427 596 IPR003593 AAA+ ATPase domain SMART SM00962 1.2E-87 428 634 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain Pfam PF00448 2.1E-56 429 633 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain ProSitePatterns PS00300 NA 607 620 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain
Subcellular Localization
Localization	endoplasmic reticulum
Evidence	SUBAcon
Pubmed ID	23180787