Basic information
Locus name	AT5G24120
Alias	ATSIG5
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	SIGMA FACTOR E (SIGE); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: response to blue light, response to red light, response to far red light, regulation of transcription, DNA-dependent, transcription initiation;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process DNA-dependent transcription, initiation regulation of transcription, DNA-dependent molecular function DNA binding sequence-specific DNA binding transcription factor activity sigma factor activity
Sequence	AT5G24120.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_178072	Accession Taxon NP_197800 ( AT5G24120 ) Arabidopsis thaliana NP_001056463 Oryza sativa Japonica Group fgenesh2_pg.scaffold_92000013 Physcomitrella patens subsp. patens 30169.m006532 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF88946 7.5E-37 94 351 IPR013325 RNA polymerase sigma factor, region 2 PANTHER PTHR30603 4.5E-50 175 517 No hit NA Coils Coil NA 179 200 No hit NA TIGRFAM TIGR02937 2.9E-23 279 506 IPR014284 RNA polymerase sigma-70 like domain Pfam PF04542 2.3E-11 283 351 IPR007627 RNA polymerase sigma-70 region 2 PRINTS PR00046 7.1E-13 310 323 IPR000943 RNA polymerase sigma-70 PRINTS PR00046 7.1E-13 334 342 IPR000943 RNA polymerase sigma-70 SUPERFAMILY SSF88659 8.3E-9 358 417 IPR013324 RNA polymerase sigma factor, region 3/4 Pfam PF04539 3.4E-16 366 437 IPR007624 RNA polymerase sigma-70 region 3 SUPERFAMILY SSF88659 1.4E-17 443 515 IPR013324 RNA polymerase sigma factor, region 3/4 Pfam PF04545 4.0E-14 452 505 IPR007630 RNA polymerase sigma-70 region 4 PRINTS PR00046 7.1E-13 456 468 IPR000943 RNA polymerase sigma-70 PRINTS PR00046 7.1E-13 477 492 IPR000943 RNA polymerase sigma-70 PRINTS PR00046 7.1E-13 492 503 IPR000943 RNA polymerase sigma-70
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787