Basic information
Locus name	AT4G13180
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	redox regulation
Effect for Senescence	unclear
Gene Description	short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to arsenic;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process metabolic process molecular function oxidoreductase activity
Sequence	AT4G13180.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_129240	Accession Taxon NP_187048 Arabidopsis thaliana NP_193054 ( AT4G13180 ) Arabidopsis thaliana NP_197322 Arabidopsis thaliana NP_566221 Arabidopsis thaliana NP_001051265 Oryza sativa Japonica Group NP_001051666 Oryza sativa Japonica Group NP_001056999 Oryza sativa Japonica Group NP_001058988 Oryza sativa Japonica Group NP_001059986 Oryza sativa Japonica Group NP_001064751 Oryza sativa Japonica Group 29588.m000888 Ricinus communis 29950.m001147 Ricinus communis 29950.m001148 Ricinus communis 29950.m001155 Ricinus communis 30131.m007229 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24322 7.5E-56 12 263 No hit NA SUPERFAMILY SSF51735 2.1E-74 15 262 No hit NA PRINTS PR00081 1.5E-31 17 34 IPR002347 Glucose/ribitol dehydrogenase Pfam PF13561 2.9E-31 24 261 No hit NA PRINTS PR00080 2.5E-6 95 106 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 1.5E-31 95 106 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 1.5E-31 144 160 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00080 2.5E-6 150 158 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00080 2.5E-6 170 189 IPR002198 Short-chain dehydrogenase/reductase SDR PRINTS PR00081 1.5E-31 170 189 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 1.5E-31 191 208 IPR002347 Glucose/ribitol dehydrogenase PRINTS PR00081 1.5E-31 225 245 IPR002347 Glucose/ribitol dehydrogenase