Basic information
Locus name	AT5G54840
Alias	SGP1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	SGP1; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 29 plant structures;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process small GTPase mediated signal transduction molecular function GTP binding
Sequence	AT5G54840.1 | Genomic | mRNA | CDS | Protein AT5G54840.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_132753	Accession Taxon NP_200295 ( AT5G54840 ) Arabidopsis thaliana NP_974933 Arabidopsis thaliana CMG153C Cyanidioschyzon merolae strain 10D NP_001059815 Oryza sativa Japonica Group 29666.m001485 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24073 8.8E-196 1 288 No hit NA PIRSF PIRSF037527 5.4E-174 1 288 IPR017231 Small GTPase superfamily, Tem1 PRINTS PR00449 1.2E-11 102 123 IPR001806 Small GTPase superfamily SMART SM00175 1.9E-6 102 269 IPR003579 Small GTPase superfamily, Rab type SUPERFAMILY SSF52540 2.4E-30 102 280 IPR027417 P-loop containing nucleoside triphosphate hydrolase Pfam PF08477 8.0E-31 103 216 IPR013684 Mitochondrial Rho-like TIGRFAM TIGR00231 3.2E-12 103 263 IPR005225 Small GTP-binding protein domain PRINTS PR00449 1.2E-11 142 164 IPR001806 Small GTPase superfamily PRINTS PR00449 1.2E-11 204 217 IPR001806 Small GTPase superfamily PRINTS PR00449 1.2E-11 244 266 IPR001806 Small GTPase superfamily
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787