Basic information
Locus name	AT4G39180
Alias	SEC14
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	SEC14; FUNCTIONS IN: phosphatidylinositol transporter activity; INVOLVED IN: phosphatidylcholine biosynthetic process; LOCATED IN: intracellular;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transport cellular component intracellular molecular function transporter activity
Sequence	AT4G39180.1 | Genomic | mRNA | CDS | Protein AT4G39180.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G39180.1  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -29.1 kcal/mol  p-value: 0.001305  position: 2276  target 5' A              A     C  3'             UUCGUCAUCAUCAU AUCAU                 AAGUAGUAGUAGUA UAGUA      miRNA  3' A              G        5'  target: AT4G39180.2  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -29.1 kcal/mol  p-value: 0.001082  position: 1888  target 5' A              A     C  3'             UUCGUCAUCAUCAU AUCAU                 AAGUAGUAGUAGUA UAGUA      miRNA  3' A              G        5'
Ortholog Group
Ortholog Groups: OG5_126879	Accession Taxon NP_001031389 Arabidopsis thaliana NP_179410 Arabidopsis thaliana NP_195184 Arabidopsis thaliana NP_195629 ( AT4G39180 ) Arabidopsis thaliana NP_565387 Arabidopsis thaliana NP_565514 Arabidopsis thaliana NP_568006 Arabidopsis thaliana 103623 Chlamydomonas reinhardtii 105305 Chlamydomonas reinhardtii 115434 Chlamydomonas reinhardtii 123583 Chlamydomonas reinhardtii ACO66772 Micromonas sp. RCC299 NP_001045802 Oryza sativa Japonica Group NP_001046745 Oryza sativa Japonica Group NP_001064068 Oryza sativa Japonica Group 0500010107 Ostreococcus tauri gw1.05.00.340.1 Ostreococcus tauri e_gw1.24.206.1 Physcomitrella patens subsp. patens e_gw1.47.71.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_990074 Physcomitrella patens subsp. patens 29634.m002081 Ricinus communis 30131.m007075 Ricinus communis fgenesh1_pg.C_chr_12000172 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_3000204 Thalassiosira pseudonana CCMP1335 XP_002949616 Volvox carteri f. nagariensis XP_002953511 Volvox carteri f. nagariensis XP_002955834 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23324 4.3E-282 8 554 No hit NA SUPERFAMILY SSF46938 1.8E-20 62 134 IPR011074 CRAL/TRIO, N-terminal domain Pfam PF03765 5.8E-12 72 117 IPR011074 CRAL/TRIO, N-terminal domain SMART SM01100 6.0E-9 93 118 IPR011074 CRAL/TRIO, N-terminal domain PRINTS PR00180 3.2E-7 96 118 IPR001071 Cellular retinaldehyde binding/alpha-tocopherol transport ProSiteProfiles PS50191 27.8 138 312 IPR001251 CRAL-TRIO domain SMART SM00516 9.1E-57 138 309 IPR001251 CRAL-TRIO domain SUPERFAMILY SSF52087 3.7E-61 138 334 IPR001251 CRAL-TRIO domain Pfam PF00650 3.0E-34 142 307 IPR001251 CRAL-TRIO domain PRINTS PR00180 3.2E-7 265 284 IPR001071 Cellular retinaldehyde binding/alpha-tocopherol transport PRINTS PR00180 3.2E-7 298 307 IPR001071 Cellular retinaldehyde binding/alpha-tocopherol transport Coils Coil NA 475 534 No hit NA