Basic information
Locus name	AT3G55460
Alias	SCL30
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	redox regulation
Effect for Senescence	unclear
Gene Description	SCL30; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to oxidative stress, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function nucleic acid binding
Sequence	AT3G55460.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G55460.1  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -35.8 kcal/mol  p-value: 0.000263  position: 730  target 5' G                    G  3'             UGCUGCUGCUGCUGCU CCA                 AUGGUGGCGAUGACGA GGU      miRNA  3' A                U      5'
Ortholog Group
Ortholog Groups: OG5_127418	Accession Taxon NP_001031195 Arabidopsis thaliana NP_187966 Arabidopsis thaliana NP_201225 Arabidopsis thaliana NP_564685 Arabidopsis thaliana NP_567021 ( AT3G55460 ) Arabidopsis thaliana NP_851261 Arabidopsis thaliana CML202C Cyanidioschyzon merolae strain 10D 113900 Chlamydomonas reinhardtii 116256 Chlamydomonas reinhardtii 188086 Chlamydomonas reinhardtii ACO65214 Micromonas sp. RCC299 ACO66139 Micromonas sp. RCC299 ACO70045 Micromonas sp. RCC299 NP_001046448 Oryza sativa Japonica Group NP_001060322 Oryza sativa Japonica Group NP_001060372 Oryza sativa Japonica Group NP_001062094 Oryza sativa Japonica Group NP_001067091 Oryza sativa Japonica Group 0500010358 Ostreococcus tauri gw1.04.00.530.1 Ostreococcus tauri e_gw1.183.81.1 Physcomitrella patens subsp. patens e_gw1.42.218.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1690028 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_3970019 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_2700006 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_169000029 Physcomitrella patens subsp. patens 27383.m000159 Ricinus communis 27553.m000316 Ricinus communis 29581.m000256 Ricinus communis 30084.m000177 Ricinus communis estExt_fgenesh1_pg.C_chr_60490 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_1001111 Thalassiosira pseudonana CCMP1335 XP_002948762 Volvox carteri f. nagariensis XP_002948836 Volvox carteri f. nagariensis XP_002953902 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23147 4.1E-67 6 262 No hit NA SUPERFAMILY SSF54928 4.9E-26 15 134 No hit NA ProSiteProfiles PS50102 17.9 47 125 IPR000504 RNA recognition motif domain SMART SM00360 1.2E-21 48 121 IPR000504 RNA recognition motif domain Pfam PF00076 5.1E-19 49 119 IPR000504 RNA recognition motif domain
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization nucleus Evidence SUBAcon Pubmed ID 23180787