Basic information
Locus name	AT3G25230
Alias	ROF1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	ROTAMASE FKBP 1 (ROF1); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative (TAIR:AT5G48570.1).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process protein folding
Sequence	AT3G25230.1 | Genomic | mRNA | CDS | Protein AT3G25230.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126727	Accession Taxon NP_001118695 ( AT3G25230 ) Arabidopsis thaliana NP_189160 Arabidopsis thaliana NP_199380 Arabidopsis thaliana NP_199668 Arabidopsis thaliana CMH076C Cyanidioschyzon merolae strain 10D CMH207C Cyanidioschyzon merolae strain 10D 195500 Chlamydomonas reinhardtii 195502 Chlamydomonas reinhardtii 34008 Chlamydomonas reinhardtii 34108 Chlamydomonas reinhardtii 77543 Chlamydomonas reinhardtii 80367 Chlamydomonas reinhardtii NP_113134 Guillardia theta ACO60879 Micromonas sp. RCC299 ACO64493 Micromonas sp. RCC299 ACO65335 Micromonas sp. RCC299 ACO69687 Micromonas sp. RCC299 NP_001046873 Oryza sativa Japonica Group NP_001052535 Oryza sativa Japonica Group NP_001058294 Oryza sativa Japonica Group NP_001062292 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_11.00010331 Ostreococcus tauri e_gw1.109.90.1 Physcomitrella patens subsp. patens e_gw1.144.13.1 Physcomitrella patens subsp. patens e_gw1.347.18.1 Physcomitrella patens subsp. patens 27956.m000360 Ricinus communis 28066.m000021 Ricinus communis 28401.m000077 Ricinus communis 29940.m000403 Ricinus communis e_gw1.4.571.1 Thalassiosira pseudonana CCMP1335 e_gw1.6.639.1 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_80337 Thalassiosira pseudonana CCMP1335 XP_002947775 Volvox carteri f. nagariensis XP_002948840 Volvox carteri f. nagariensis XP_002952843 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10516 0.0 11 549 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type SUPERFAMILY SSF54534 1.1E-45 33 149 No hit NA Pfam PF00254 1.7E-34 51 142 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain ProSiteProfiles PS50059 31.3 57 145 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain SUPERFAMILY SSF54534 1.3E-24 150 265 No hit NA Pfam PF00254 1.8E-17 168 259 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain ProSiteProfiles PS50059 19.2 173 262 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain SUPERFAMILY SSF54534 2.6E-32 265 401 No hit NA Pfam PF00254 5.9E-22 284 380 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain ProSiteProfiles PS50059 21.7 290 383 IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain SUPERFAMILY SSF48452 6.8E-31 388 547 No hit NA ProSiteProfiles PS50005 6.1 400 433 IPR019734 Tetratricopeptide repeat SMART SM00028 86.0 400 433 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50005 5.3 449 482 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50293 15.1 449 516 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00028 0.0 449 482 IPR019734 Tetratricopeptide repeat Pfam PF13414 6.5E-12 454 514 No hit NA ProSiteProfiles PS50005 10.7 483 516 IPR019734 Tetratricopeptide repeat SMART SM00028 1.2E-6 483 516 IPR019734 Tetratricopeptide repeat Coils Coil NA 516 540 No hit NA
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787