Basic information
Locus name	AT5G12190
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G14870.1.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function nucleic acid binding
Sequence	AT5G12190.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128783	Accession Taxon NP_196780 ( AT5G12190 ) Arabidopsis thaliana 81024 Chlamydomonas reinhardtii ACO64902 Micromonas sp. RCC299 NP_001051674 Oryza sativa Japonica Group 1600010087 Ostreococcus tauri estExt_Genewise1.C_630098 Physcomitrella patens subsp. patens 29868.m000351 Ricinus communis gw1.1.842.1 Thalassiosira pseudonana CCMP1335 XP_002950190 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22630 9.8E-79 1 123 No hit NA SUPERFAMILY SSF54928 9.5E-25 7 102 No hit NA ProSiteProfiles PS50102 16.4 19 94 IPR000504 RNA recognition motif domain SMART SM00360 9.3E-19 20 90 IPR000504 RNA recognition motif domain Pfam PF00076 1.1E-18 21 87 IPR000504 RNA recognition motif domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787