Leaf Senescence DataBase

Basic information

Locus name

AT5G53920

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

ribosomal protein L11 methyltransferase-related; FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm.

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	protein methylation
cellular component	cytoplasm
molecular function	protein methyltransferase activity

Pathway

KEGG

map00130 (EC 2.1.1.-)
map00253 (EC 2.1.1.-)
map00340 (EC 2.1.1.-)
map00350 (EC 2.1.1.-)
map00360 (EC 2.1.1.-)
map00380 (EC 2.1.1.-)
map00402 (EC 2.1.1.-)
map00522 (EC 2.1.1.-)
map00624 (EC 2.1.1.-)
map00680 (EC 2.1.1.-)
map00860 (EC 2.1.1.-)
map00906 (EC 2.1.1.-)
map00940 (EC 2.1.1.-)
map00941 (EC 2.1.1.-)
map00942 (EC 2.1.1.-)
map00945 (EC 2.1.1.-)
map00950 (EC 2.1.1.-)
map00981 (EC 2.1.1.-)

Sequence

AT5G53920.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_132140

Accession	Taxon
NP_200203 ( AT5G53920 )	Arabidopsis thaliana
CMQ306C	Cyanidioschyzon merolae strain 10D
ACO67870	Micromonas sp. RCC299
NP_001055944	Oryza sativa Japonica Group
e_gw1.04.00.350.1	Ostreococcus tauri
e_gw1.71.60.1	Physcomitrella patens subsp. patens
29768.m000108	Ricinus communis
e_gw1.2.632.1	Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_20000073	Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_6000001	Thalassiosira pseudonana CCMP1335
XP_002952706	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Hamap	MF_00735	29.7	68	364	IPR004498	Ribosomal protein L11 methyltransferase
Pfam	PF06325	1.1E-88	68	365	IPR010456	Ribosomal L11 methyltransferase, PrmA
TIGRFAM	TIGR00406	1.6E-59	68	358	IPR004498	Ribosomal protein L11 methyltransferase
PANTHER	PTHR18895	1.7E-73	126	367	No hit	NA
SUPERFAMILY	SSF53335	4.3E-35	142	361	No hit	NA