Basic information
Locus name	AT1G47890
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:PPI
Effect for Senescence	Unclear
Gene Description	Leucine-rich repeat family protein. Developmental senescence-enhanced genes dependent on SA pathway.
Evidence	Molecular evidence: microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding
Sequence	AT1G47890.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G47890.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -30.6 kcal/mol  p-value: 0.014274  position:  157  target 5' A   G                C 3'             UCU UUUCCUUAUCCUCAUU              AGG GGAGGGAUAGGAGUAG   miRNA  3' G   A                  5'  target: AT1G47890.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -30.6 kcal/mol  p-value: 0.015523  position:  157  target 5' A   G                C 3'             UCU UUUCCUUAUCCUCAUU              AGG GGAGGGAUAGGAGUAG   miRNA  3' G   A                  5'  target: AT1G47890.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -30.6 kcal/mol  p-value: 0.014088  position:  157  target 5' A   G                C 3'             UCU UUUCCUUAUCCUCAUU              AGG GGAGGGAUAGGAGUAG   miRNA  3' G   A                  5'  target: AT1G47890.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -30.6 kcal/mol  p-value: 0.015204  position:  157  target 5' A   G                C 3'             UCU UUUCCUUAUCCUCAUU              AGG GGAGGGAUAGGAGUAG   miRNA  3' G   A                  5'  target: AT1G47890.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -30.6 kcal/mol  p-value: 0.016101  position:  157  target 5' A   G                C 3'             UCU UUUCCUUAUCCUCAUU              AGG GGAGGGAUAGGAGUAG   miRNA  3' G   A                  5'
Ortholog Group
Ortholog Groups: OG5_130149	Accession Taxon NP_001154519 Arabidopsis thaliana NP_001154652 Arabidopsis thaliana NP_175139 Arabidopsis thaliana NP_175225 ( AT1G47890 ) Arabidopsis thaliana NP_177295 Arabidopsis thaliana NP_177296 Arabidopsis thaliana NP_179112 Arabidopsis thaliana NP_180114 Arabidopsis thaliana NP_180825 Arabidopsis thaliana NP_180827 Arabidopsis thaliana NP_180861 Arabidopsis thaliana NP_180864 Arabidopsis thaliana NP_180865 Arabidopsis thaliana NP_180867 Arabidopsis thaliana NP_187187 Arabidopsis thaliana NP_187188 Arabidopsis thaliana NP_187216 Arabidopsis thaliana NP_187217 Arabidopsis thaliana NP_187712 Arabidopsis thaliana NP_187719 Arabidopsis thaliana NP_188941 Arabidopsis thaliana NP_188952 Arabidopsis thaliana NP_188953 Arabidopsis thaliana NP_189134 Arabidopsis thaliana NP_189137 Arabidopsis thaliana NP_189138 Arabidopsis thaliana NP_189531 Arabidopsis thaliana NP_193117 Arabidopsis thaliana NP_193118 Arabidopsis thaliana NP_193124 Arabidopsis thaliana NP_197963 Arabidopsis thaliana NP_198058 Arabidopsis thaliana NP_198833 Arabidopsis thaliana NP_566757 Arabidopsis thaliana NP_567412 Arabidopsis thaliana NP_849957 Arabidopsis thaliana 142748 Chlamydomonas reinhardtii NP_001041930 Oryza sativa Japonica Group NP_001042079 Oryza sativa Japonica Group NP_001042089 Oryza sativa Japonica Group NP_001042091 Oryza sativa Japonica Group NP_001042092 Oryza sativa Japonica Group NP_001042093 Oryza sativa Japonica Group NP_001042098 Oryza sativa Japonica Group NP_001042100 Oryza sativa Japonica Group NP_001052528 Oryza sativa Japonica Group NP_001053102 Oryza sativa Japonica Group NP_001066404 Oryza sativa Japonica Group NP_001066407 Oryza sativa Japonica Group NP_001066419 Oryza sativa Japonica Group 29601.m000437 Ricinus communis 29601.m000438 Ricinus communis 29836.m000564 Ricinus communis 29848.m004515 Ricinus communis 29848.m004518 Ricinus communis thaps1_ua_kg.chr_4000259 Thalassiosira pseudonana CCMP1335 XP_002954213 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF52058 2.5E-9 45 206 No hit NA Pfam PF08263 2.7E-11 76 112 IPR013210 Leucine-rich repeat-containing N-terminal, type 2 PANTHER PTHR24420 6.1E-284 122 1015 No hit NA SMART SM00369 34.0 141 165 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.5 143 164 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52047 8.6E-53 146 184 No hit NA SMART SM00369 180.0 166 190 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 4.6 168 189 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52047 8.6E-53 217 460 No hit NA SMART SM00369 70.0 226 249 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 1.2 228 249 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.6 228 249 IPR001611 Leucine-rich repeat Pfam PF13516 0.7 252 271 No hit NA ProSiteProfiles PS51450 5.3 252 274 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.5 276 299 IPR001611 Leucine-rich repeat SMART SM00365 59.0 346 372 No hit NA SMART SM00369 24.0 346 370 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.2 348 370 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 6.3 348 370 IPR001611 Leucine-rich repeat SMART SM00365 190.0 394 420 No hit NA SMART SM00369 29.0 394 418 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 1.0 396 418 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.7 396 418 IPR001611 Leucine-rich repeat SMART SM00369 77.0 442 467 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.5 444 465 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 1.2E-59 508 575 No hit NA SUPERFAMILY SSF52047 8.6E-53 516 600 No hit NA Pfam PF13855 7.0E-11 518 577 No hit NA SMART SM00369 370.0 518 540 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.7 519 540 IPR001611 Leucine-rich repeat SMART SM00369 120.0 541 564 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.7 542 564 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.0 566 587 IPR001611 Leucine-rich repeat PRINTS PR00019 7.4E-6 567 580 No hit NA SUPERFAMILY SSF52058 1.2E-59 621 736 No hit NA PRINTS PR00019 7.4E-6 634 647 No hit NA SMART SM00365 190.0 634 667 No hit NA SMART SM00369 21.0 634 657 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.1 636 656 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 6.9 636 659 IPR001611 Leucine-rich repeat SMART SM00369 14.0 659 682 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.8 661 683 IPR001611 Leucine-rich repeat Pfam PF13855 5.5E-10 685 743 No hit NA ProSiteProfiles PS51450 5.5 685 707 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 6.3 709 730 IPR001611 Leucine-rich repeat SMART SM00369 280.0 731 757 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 4.7 760 781 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.9 832 854 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 1.2E-59 836 942 No hit NA SMART SM00369 280.0 854 877 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.6 856 879 IPR001611 Leucine-rich repeat Pfam PF00560 0.1 857 878 IPR001611 Leucine-rich repeat SMART SM00365 37.0 878 912 No hit NA SMART SM00369 10.0 878 902 IPR003591 Leucine-rich repeat, typical subtype Pfam PF12799 1.7E-8 879 915 IPR025875 Leucine rich repeat 4 ProSiteProfiles PS51450 7.1 880 902 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.8 904 926 IPR001611 Leucine-rich repeat