Leaf Senescence DataBase

Basic information

Locus name

AT5G15650

Alias

RGP2

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2 (RGP2); FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cytosolic ribosome, cell wall, membrane; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, leaf; EXPRESSED DURING: seedling growth;

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	cellulose biosynthetic process
molecular function	intramolecular transferase activity

Pathway

KEGG

map00051 (EC 2.4.1.-)
map00510 (EC 2.4.1.-)
map00512 (EC 2.4.1.-)
map00513 (EC 2.4.1.-)
map00514 (EC 2.4.1.-)
map00522 (EC 2.4.1.-)
map00524 (EC 2.4.1.-)
map00533 (EC 2.4.1.-)
map00540 (EC 2.4.1.-)
map00550 (EC 2.4.1.-)
map00561 (EC 2.4.1.-)
map00563 (EC 2.4.1.-)
map00600 (EC 2.4.1.-)
map00601 (EC 2.4.1.-)
map00603 (EC 2.4.1.-)
map00604 (EC 2.4.1.-)
map00906 (EC 2.4.1.-)
map00908 (EC 2.4.1.-)
map00941 (EC 2.4.1.-)
map00942 (EC 2.4.1.-)
map00944 (EC 2.4.1.-)
map00945 (EC 2.4.1.-)
map00965 (EC 2.4.1.-)

Sequence

AT5G15650.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_137079

Accession	Taxon
NP_186872	Arabidopsis thaliana
NP_187502	Arabidopsis thaliana
NP_197069 ( AT5G15650 )	Arabidopsis thaliana
187866	Chlamydomonas reinhardtii
NP_001050617	Oryza sativa Japonica Group
NP_001060224	Oryza sativa Japonica Group
e_gw1.66.84.1	Physcomitrella patens subsp. patens
estExt_Genewise1.C_1310039	Physcomitrella patens subsp. patens
estExt_Genewise1.C_660100	Physcomitrella patens subsp. patens
estExt_fgenesh1_kg.C_660003	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_131000007	Physcomitrella patens subsp. patens
29790.m000807	Ricinus communis
30138.m003944	Ricinus communis
30147.m014473	Ricinus communis
30174.m009085	Ricinus communis
XP_002947267	Volvox carteri f. nagariensis
XP_002957802	Volvox carteri f. nagariensis
XP_002958792	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR31682	5.0E-251	4	356	No hit	NA
PIRSF	PIRSF016429	1.5E-271	5	359	IPR004901	Reversibly glycosylated polypeptide family
Pfam	PF03214	1.5E-175	18	353	IPR004901	Reversibly glycosylated polypeptide family
SUPERFAMILY	SSF53448	1.4E-6	23	252	No hit	NA

Subcellular Localization

Localization

golgi

Evidence

SUBAcon

Pubmed ID

23180787