Basic information
Locus name	AT5G58290
Alias	RPT3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	REGULATORY PARTICLE TRIPLE-A ATPASE 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, cell wall, nucleus, membrane;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process protein catabolic process cellular component cytoplasm molecular function ATP binding hydrolase activity nucleoside-triphosphatase activity nucleotide binding
Pathway	Reactome REACT_11045 REACT_13 REACT_13635 REACT_152 REACT_1538 REACT_383 REACT_578 REACT_6185 REACT_6850
Sequence	AT5G58290.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127831	Accession Taxon NP_200637 ( AT5G58290 ) Arabidopsis thaliana CMF078C Cyanidioschyzon merolae strain 10D NP_113211 Guillardia theta ACO63460 Micromonas sp. RCC299 NP_001046700 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_09.0001000040 Ostreococcus tauri e_gw1.36.185.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2430035 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_790093 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1470050 Physcomitrella patens subsp. patens 30045.m000470 Ricinus communis estExt_fgenesh1_pg.C_chr_120149 Thalassiosira pseudonana CCMP1335 XP_002947071 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23073 8.0E-279 24 408 No hit NA TIGRFAM TIGR01242 8.6E-135 39 391 IPR005937 26S proteasome subunit P45 Coils Coil NA 48 76 No hit NA SUPERFAMILY SSF52540 7.4E-66 150 393 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 1.5E-23 188 327 IPR003593 AAA+ ATPase domain Pfam PF00004 1.9E-44 192 325 IPR003959 ATPase, AAA-type, core ProSitePatterns PS00674 NA 295 313 IPR003960 ATPase, AAA-type, conserved site
Subcellular Localization
Localization 1 Localization cytosol Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol,nucleus Evidence SUBAcon Pubmed ID 23180787