Leaf Senescence DataBase

Basic information

Locus name

AT5G52580

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

signal transduction

Effect for Senescence

unclear

Gene Description

RAB GTPase activator; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures;

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	regulation of Rab GTPase activity
cellular component	intracellular
molecular function	Rab GTPase activator activity

Sequence

Ortholog Group

Ortholog Groups: OG5_127637

Accession	Taxon
NP_200071 ( AT5G52580 )	Arabidopsis thaliana
CMK029C	Cyanidioschyzon merolae strain 10D
195586	Chlamydomonas reinhardtii
NP_001047892	Oryza sativa Japonica Group
estExt_gwp_gw1.C_3680008	Physcomitrella patens subsp. patens
29927.m000598	Ricinus communis
XP_002950778	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR22957	9.2E-178	89	658	No hit	NA
Pfam	PF12068	3.4E-21	108	189	IPR021935	Domain of unknown function DUF3548
SUPERFAMILY	SSF47923	5.8E-50	369	560	IPR000195	Rab-GTPase-TBC domain
SMART	SM00164	2.7E-51	388	626	IPR000195	Rab-GTPase-TBC domain
ProSiteProfiles	PS50086	37.6	391	601	IPR000195	Rab-GTPase-TBC domain
Pfam	PF00566	7.2E-49	394	623	IPR000195	Rab-GTPase-TBC domain
SUPERFAMILY	SSF47923	6.8E-34	536	657	IPR000195	Rab-GTPase-TBC domain

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787