Basic information
Locus name	AT5G54960
Alias	PDC2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	pyruvate decarboxylase-2 (PDC2); FUNCTIONS IN: pyruvate decarboxylase activity, magnesium ion binding, carboxy-lyase activity, thiamin pyrophosphate binding, catalytic activity; INVOLVED IN: response to hypoxia; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function catalytic activity magnesium ion binding thiamine pyrophosphate binding
Sequence	AT5G54960.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129158	Accession Taxon NP_195033 Arabidopsis thaliana NP_195752 Arabidopsis thaliana NP_195753 Arabidopsis thaliana NP_200307 ( AT5G54960 ) Arabidopsis thaliana 127786 Chlamydomonas reinhardtii NP_001042088 Oryza sativa Japonica Group NP_001049811 Oryza sativa Japonica Group NP_001055803 Oryza sativa Japonica Group NP_001060727 Oryza sativa Japonica Group e_gw1.170.59.1 Physcomitrella patens subsp. patens e_gw1.25.158.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_590259 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_344000001 Physcomitrella patens subsp. patens 29601.m000442 Ricinus communis 29900.m001589 Ricinus communis 30138.m003963 Ricinus communis 30138.m003964 Ricinus communis XP_002951658 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF036565 3.2E-276 32 602 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme PANTHER PTHR18968 7.0E-287 44 607 No hit NA Pfam PF02776 9.5E-37 46 213 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain SUPERFAMILY SSF52518 2.5E-45 46 225 No hit NA SUPERFAMILY SSF52467 2.4E-32 238 386 No hit NA Pfam PF00205 9.9E-17 243 361 IPR012000 Thiamine pyrophosphate enzyme, central domain SUPERFAMILY SSF52518 2.9E-41 408 602 No hit NA Pfam PF02775 6.4E-16 454 578 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Coils Coil NA 551 572 No hit NA
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787