Basic information
Locus name	AT3G56110
Alias	PRA1.B1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	PRENYLATED RAB ACCEPTOR 1.B1 (PRA1.B1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT3G56110.1 | Genomic | mRNA | CDS | Protein AT3G56110.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G56110.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -39.3 kcal/mol  p-value: 0.000283  position: 439  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -39.3 kcal/mol  p-value: 0.000120  position: 439  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -39.3 kcal/mol  p-value: 0.000096  position: 439  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -39.3 kcal/mol  p-value: 0.000229  position: 439  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -39.3 kcal/mol  p-value: 0.000056  position: 439  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.2  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -39.3 kcal/mol  p-value: 0.000275  position: 461  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.2  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -39.3 kcal/mol  p-value: 0.000116  position: 461  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.2  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -39.3 kcal/mol  p-value: 0.000093  position: 461  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.2  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -39.3 kcal/mol  p-value: 0.000223  position: 461  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'  target: AT3G56110.2  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -39.3 kcal/mol  p-value: 0.000054  position: 461  target 5' U    C                G  3'             CUCU CCUCCUUGUCCUCAUC                 GAGG GGAGGGAUAGGAGUAG      miRNA  3'      A                   5'
Ortholog Group
Ortholog Groups: OG5_128897	Accession Taxon NP_173212 Arabidopsis thaliana NP_181569 Arabidopsis thaliana NP_191170 ( AT3G56110 ) Arabidopsis thaliana NP_195784 Arabidopsis thaliana NP_196157 Arabidopsis thaliana NP_196328 Arabidopsis thaliana NP_563826 Arabidopsis thaliana CME009C Cyanidioschyzon merolae strain 10D CMQ198C Cyanidioschyzon merolae strain 10D 171434 Chlamydomonas reinhardtii ACO65011 Micromonas sp. RCC299 ACO70382 Micromonas sp. RCC299 NP_001055824 Oryza sativa Japonica Group NP_001065546 Oryza sativa Japonica Group NP_001065946 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_11.0001000013 Ostreococcus tauri e_gw1.30.125.1 Physcomitrella patens subsp. patens estExt_fgenesh1_kg.C_510001 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1260041 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2570024 Physcomitrella patens subsp. patens 29598.m000451 Ricinus communis 29729.m002297 Ricinus communis 29820.m001012 Ricinus communis 29883.m002005 Ricinus communis XP_002950258 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR19317 3.5E-65 18 209 No hit NA Pfam PF03208 1.6E-51 37 187 IPR004895 Prenylated rab acceptor PRA1
Subcellular Localization
Localization 1 Localization plastid Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization plastid,plasma membrane Evidence SUBAcon Pubmed ID 23180787