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Locus name | AT3G55140 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Others | Effect for Senescence | unclear | Gene Description | pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Sequence | AT3G55140.1 | Genomic | mRNA | CDS | Protein AT3G55140.2 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
| Details | | target: AT3G55140.1 miRNA: ath-miR838 miRNA: ath-miR838 mfe: -28.9 kcal/mol p-value: 0.001549
position: 195 target 5' C A G 3' GUG AGGAGGUAGGAGGAAA CAC UUCUUCAUCUUCUUUU miRNA 3' A G 5'
target: AT3G55140.2 miRNA: ath-miR838 miRNA: ath-miR838 mfe: -28.9 kcal/mol p-value: 0.001816
position: 353 target 5' C A G 3' GUG AGGAGGUAGGAGGAAA CAC UUCUUCAUCUUCUUUU miRNA 3' A G 5'
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Ortholog Group | |
| Ortholog Groups: OG5_140233 | |
Cross Link | |
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