Leaf Senescence DataBase

Basic information

Locus name

AT3G26510

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

octicosapeptide/Phox/Bem1p (PB1) domain-containing protein;

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

protein binding

Sequence

miRNA Interaction

Details

target: AT3G26510.1
miRNA: ath-miR779.1
miRNA: ath-miR779.1
mfe: -31.2 kcal/mol
p-value: 0.001763

position: 240
target 5' G   U          C      U  3'
           AUG GCGGCGGCGU GGCGGA
           UAC CGUCGUUGUA UCGUCU
miRNA  3'     U                 U  5'

target: AT3G26510.1
miRNA: ath-miR860
miRNA: ath-miR860
mfe: -27.0 kcal/mol
p-value: 0.002295

position: 899
target 5' G                U    A  3'
           GUAUGUGGUCCAGUUU UUGA
           UAUGUAUCAGGUUAGA AACU
miRNA  3'                  U       5'

target: AT3G26510.2
miRNA: ath-miR779.1
miRNA: ath-miR779.1
mfe: -31.2 kcal/mol
p-value: 0.001079

position: 240
target 5' G   U          C      U  3'
           AUG GCGGCGGCGU GGCGGA
           UAC CGUCGUUGUA UCGUCU
miRNA  3'     U                 U  5'

target: AT3G26510.3
miRNA: ath-miR779.1
miRNA: ath-miR779.1
mfe: -31.2 kcal/mol
p-value: 0.001249

position: 239
target 5' G   U          C      U  3'
           AUG GCGGCGGCGU GGCGGA
           UAC CGUCGUUGUA UCGUCU
miRNA  3'     U                 U  5'

target: AT3G26510.4
miRNA: ath-miR779.1
miRNA: ath-miR779.1
mfe: -31.2 kcal/mol
p-value: 0.001163

position: 239
target 5' G   U          C      U  3'
           AUG GCGGCGGCGU GGCGGA
           UAC CGUCGUUGUA UCGUCU
miRNA  3'     U                 U  5'

target: AT3G26510.5
miRNA: ath-miR779.1
miRNA: ath-miR779.1
mfe: -31.2 kcal/mol
p-value: 0.002186

position: 352
target 5' G   U          C      U  3'
           AUG GCGGCGGCGU GGCGGA
           UAC CGUCGUUGUA UCGUCU
miRNA  3'     U                 U  5'

target: AT3G26510.5
miRNA: ath-miR860
miRNA: ath-miR860
mfe: -27.0 kcal/mol
p-value: 0.002811

position: 1010
target 5' G                U    A  3'
           GUAUGUGGUCCAGUUU UUGA
           UAUGUAUCAGGUUAGA AACU
miRNA  3'                  U       5'

Ortholog Group

Ortholog Groups: OG5_156281

Accession	Taxon
NP_001030772 ( AT3G26510 )	Arabidopsis thaliana
NP_177221	Arabidopsis thaliana
NP_189282	Arabidopsis thaliana
NP_850632	Arabidopsis thaliana
NP_974365	Arabidopsis thaliana
NP_974366	Arabidopsis thaliana
NP_001067822	Oryza sativa Japonica Group
NP_001067823	Oryza sativa Japonica Group

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR31066	7.2E-27	7	118	No hit	NA
SMART	SM00666	2.5E-29	24	113	IPR000270	Phox/Bem1p
Pfam	PF00564	7.3E-21	26	113	IPR000270	Phox/Bem1p
SUPERFAMILY	SSF54277	1.2E-23	26	119	No hit	NA