Basic information
Locus name	AT4G16190
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Cysteine protease
Effect for Senescence	Unclear
Gene Description	Cysteine protease. Upregulated in senescent leaves.
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	biological process proteolysis molecular function cysteine-type peptidase activity
Sequence	AT4G16190.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G16190.1  miRNA: ath-miR406 miRNA: ath-miR406 mfe: -24.0 kcal/mol  p-value: 0.004912  position:  1117  target 5' A                    C 3'             UGGA UACAAUGGUAU CUA              ACCU AUGUUAUCGUA GAU   miRNA  3' G    A           A     5'  target: AT4G16190.1  miRNA: ath-miR779 miRNA: ath-miR779 mfe: -25.8 kcal/mol  p-value: 0.017347  position:  1049  target 5' C     G               A 3'             GUGGG AGCGAUGUGG GGAG              UACUC UCGUUGUAUC UCUU   miRNA  3'       G          G      5'
Ortholog Group
Ortholog Groups: OG5_126607	Accession Taxon NP_563764 Arabidopsis thaliana NP_564126 Arabidopsis thaliana NP_564497 Arabidopsis thaliana NP_565512 Arabidopsis thaliana NP_566633 Arabidopsis thaliana NP_567010 Arabidopsis thaliana NP_567489 ( AT4G16190 ) Arabidopsis thaliana NP_567686 Arabidopsis thaliana NP_568052 Arabidopsis thaliana NP_568620 Arabidopsis thaliana NP_568651 Arabidopsis thaliana NP_568722 Arabidopsis thaliana NP_680113 Arabidopsis thaliana 155869 Chlamydomonas reinhardtii 206048 Chlamydomonas reinhardtii ACO64037 Micromonas sp. RCC299 ACO67182 Micromonas sp. RCC299 NP_001045138 Oryza sativa Japonica Group NP_001045533 Oryza sativa Japonica Group NP_001046828 Oryza sativa Japonica Group NP_001052440 Oryza sativa Japonica Group NP_001054087 Oryza sativa Japonica Group NP_001054211 Oryza sativa Japonica Group NP_001054213 Oryza sativa Japonica Group NP_001054433 Oryza sativa Japonica Group NP_001059639 Oryza sativa Japonica Group NP_001062479 Oryza sativa Japonica Group NP_001067630 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_10.0001000033 Ostreococcus tauri gw1.02.00.400.1 Ostreococcus tauri gw1.12.00.194.1 Ostreococcus tauri estExt_Genewise1.C_190224 Physcomitrella patens subsp. patens estExt_Genewise1.C_2850006 Physcomitrella patens subsp. patens estExt_Genewise1.C_2920028 Physcomitrella patens subsp. patens estExt_Genewise1.C_490023 Physcomitrella patens subsp. patens estExt_Genewise1.C_520042 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3150037 Physcomitrella patens subsp. patens fgenesh1_kg.scaffold_369000003 Physcomitrella patens subsp. patens 28462.m000130 Ricinus communis 28962.m000448 Ricinus communis 28962.m000449 Ricinus communis 29646.m001085 Ricinus communis 29646.m001086 Ricinus communis 29646.m001109 Ricinus communis 29801.m003124 Ricinus communis 29900.m001603 Ricinus communis 29910.m000923 Ricinus communis 29910.m000924 Ricinus communis 29970.m000973 Ricinus communis 30131.m007098 Ricinus communis 30131.m007257 Ricinus communis 30147.m013826 Ricinus communis 30170.m013801 Ricinus communis 30170.m013831 Ricinus communis 30170.m014112 Ricinus communis 30170.m014122 Ricinus communis estExt_thaps1_ua_kg.C_chr_11a0064 Thalassiosira pseudonana CCMP1335 gw1.8.152.1 Thalassiosira pseudonana CCMP1335 XP_002947177 Volvox carteri f. nagariensis XP_002954352 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12411 8.1E-231 4 372 IPR013128 Peptidase C1A, papain SUPERFAMILY SSF54001 8.4E-101 51 364 No hit NA Pfam PF08246 4.5E-10 55 111 IPR013201 Proteinase inhibitor I29, cathepsin propeptide SMART SM00848 7.2E-19 55 111 IPR013201 Proteinase inhibitor I29, cathepsin propeptide Pfam PF00112 1.1E-74 140 364 IPR000668 Peptidase C1A, papain C-terminal SMART SM00645 8.0E-109 140 366 IPR000668 Peptidase C1A, papain C-terminal PRINTS PR00705 5.7E-10 158 173 IPR000668 Peptidase C1A, papain C-terminal ProSitePatterns PS00139 NA 158 169 IPR000169 Cysteine peptidase, cysteine active site PRINTS PR00705 5.7E-10 307 317 IPR000668 Peptidase C1A, papain C-terminal PRINTS PR00705 5.7E-10 329 335 IPR000668 Peptidase C1A, papain C-terminal ProSitePatterns PS00640 NA 329 348 IPR025661 Cysteine peptidase, asparagine active site
Subcellular Localization
Localization	vacuole
Evidence	SUBAcon
Pubmed ID	23180787