Basic information
Locus name	AT5G05100
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	nucleic acid binding; FUNCTIONS IN: nucleic acid binding;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function nucleic acid binding
Sequence	AT5G05100.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G05100.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -48.1 kcal/mol  p-value: 0.000022  position: 819  target 5' C                     U  3'             CUCCUCCUCCCUAUCCUCGUC                 GAGGAGGAGGGAUAGGAGUAG      miRNA  3'                          5'  target: AT5G05100.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -48.1 kcal/mol  p-value: 0.000006  position: 819  target 5' C                     U  3'             CUCCUCCUCCCUAUCCUCGUC                 GAGGAGGAGGGAUAGGAGUAG      miRNA  3'                          5'  target: AT5G05100.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -48.1 kcal/mol  p-value: 0.000004  position: 819  target 5' C                     U  3'             CUCCUCCUCCCUAUCCUCGUC                 GAGGAGGAGGGAUAGGAGUAG      miRNA  3'                          5'  target: AT5G05100.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -48.1 kcal/mol  p-value: 0.000015  position: 819  target 5' C                     U  3'             CUCCUCCUCCCUAUCCUCGUC                 GAGGAGGAGGGAUAGGAGUAG      miRNA  3'                          5'  target: AT5G05100.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -48.1 kcal/mol  p-value: 0.000002  position: 819  target 5' C                     U  3'             CUCCUCCUCCCUAUCCUCGUC                 GAGGAGGAGGGAUAGGAGUAG      miRNA  3'                          5'
Ortholog Group
Ortholog Groups: OG5_176979	Accession Taxon NP_566381 Arabidopsis thaliana NP_568149 ( AT5G05100 ) Arabidopsis thaliana NP_850556 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF82708 7.1E-27 3 111 No hit NA PANTHER PTHR15672 9.9E-173 4 324 No hit NA SMART SM00393 4.6E-11 9 92 IPR001374 Single-stranded nucleic acid binding R3H ProSiteProfiles PS51061 11.9 25 94 IPR001374 Single-stranded nucleic acid binding R3H Pfam PF12752 5.7E-11 120 166 IPR024771 SUZ domain Coils Coil NA 141 162 No hit NA