Basic information
Locus name	AT5G09920
Alias	NRPB4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	NRPB4; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription from RNA polymerase II promoter; LOCATED IN: DNA-directed RNA polymerase II, core complex;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process cellular metabolic process transcription, DNA-dependent molecular function DNA-directed RNA polymerase activity catalytic activity nucleotide binding
Sequence	AT5G09920.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128606	Accession Taxon NP_196554 ( AT5G09920 ) Arabidopsis thaliana CMT583C Cyanidioschyzon merolae strain 10D 142655 Chlamydomonas reinhardtii ACO67222 Micromonas sp. RCC299 NP_001045683 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_890005 Physcomitrella patens subsp. patens 29680.m001732 Ricinus communis fgenesh1_pg.C_chr_14000091 Thalassiosira pseudonana CCMP1335 XP_002954202 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21297 7.9E-50 3 138 No hit NA SUPERFAMILY SSF47819 1.4E-40 3 134 IPR010997 HRDC-like SMART SM00657 4.3E-64 16 138 IPR006590 RNA polymerase II, Rpb4, core Pfam PF03874 2.9E-28 23 133 IPR005574 RNA polymerase II, Rpb4
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization nucleus Evidence SUBAcon Pubmed ID 23180787