Basic information
Locus name	AT4G32940
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:vacuolar processing enzyme
Effect for Senescence	Unclear
Gene Description	Gamma vacuolar processing enzyme.
Evidence	Molecular evidence: SSH and Northern [Ref 1]; Genomic evidence:microarray data [Ref 2]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42 2: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process proteolysis molecular function cysteine-type endopeptidase activity
Sequence	AT4G32940.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130263	Accession Taxon NP_176458 Arabidopsis thaliana NP_180165 Arabidopsis thaliana NP_188656 Arabidopsis thaliana NP_195020 ( AT4G32940 ) Arabidopsis thaliana 196085 Chlamydomonas reinhardtii NP_001043344 Oryza sativa Japonica Group NP_001047562 Oryza sativa Japonica Group NP_001053428 Oryza sativa Japonica Group NP_001056504 Oryza sativa Japonica Group e_gw1.114.190.1 Physcomitrella patens subsp. patens e_gw1.16.167.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_360138 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_406000002 Physcomitrella patens subsp. patens 29794.m003351 Ricinus communis 30190.m010992 Ricinus communis XP_002953558 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF019663 0.0 4 494 IPR001096 Peptidase C13, legumain PIRSF PIRSF500139 0.0 4 494 No hit NA PANTHER PTHR12000 0.0 48 484 IPR001096 Peptidase C13, legumain Pfam PF01650 6.3E-113 59 330 IPR001096 Peptidase C13, legumain PRINTS PR00776 2.0E-56 60 84 IPR001096 Peptidase C13, legumain PRINTS PR00776 2.0E-56 85 114 IPR001096 Peptidase C13, legumain PRINTS PR00776 2.0E-56 132 147 IPR001096 Peptidase C13, legumain PRINTS PR00776 2.0E-56 160 179 IPR001096 Peptidase C13, legumain PRINTS PR00776 2.0E-56 209 225 IPR001096 Peptidase C13, legumain
Subcellular Localization
Localization 1 Localization other cytoplasmic components Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization vacuole Evidence SUBAcon Pubmed ID 23180787