Basic information
Locus name	AT5G16960
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: leaf whorl, sepal, flower, stamen;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process oxidation-reduction process molecular function oxidoreductase activity zinc ion binding
Sequence	AT5G16960.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G16960.1  miRNA: ath-miR773a miRNA: ath-miR773a mfe: -30.9 kcal/mol  p-value: 0.002200  position: 729  target 5' G         U      U    U  3'             GAGGCAAGA GCUGGA GCAG                 CUCUGUUUU CGACCU CGUU      miRNA  3'                  U    U  5'
Ortholog Group
Ortholog Groups: OG5_127214	Accession Taxon NP_001078315 Arabidopsis thaliana NP_173956 Arabidopsis thaliana NP_176734 Arabidopsis thaliana NP_186958 Arabidopsis thaliana NP_197198 ( AT5G16960 ) Arabidopsis thaliana NP_197199 Arabidopsis thaliana NP_197201 Arabidopsis thaliana NP_197202 Arabidopsis thaliana NP_198610 Arabidopsis thaliana NP_198614 Arabidopsis thaliana NP_198616 Arabidopsis thaliana NP_567087 Arabidopsis thaliana NP_001045054 Oryza sativa Japonica Group NP_001053203 Oryza sativa Japonica Group NP_001066429 Oryza sativa Japonica Group NP_001066432 Oryza sativa Japonica Group NP_001066433 Oryza sativa Japonica Group NP_001066434 Oryza sativa Japonica Group NP_001067631 Oryza sativa Japonica Group e_gw1.269.57.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_380233 Physcomitrella patens subsp. patens 27672.m000062 Ricinus communis 28320.m001125 Ricinus communis 29678.m000498 Ricinus communis 29678.m000499 Ricinus communis 29678.m000504 Ricinus communis 29929.m004505 Ricinus communis thaps1_ua_kg.chr_10000075 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF50129 3.2E-29 4 173 IPR011032 GroES-like PANTHER PTHR11695 3.6E-152 6 345 IPR002085 Alcohol dehydrogenase superfamily, zinc-type SMART SM00829 9.9E-4 42 341 IPR020843 Polyketide synthase, enoylreductase SUPERFAMILY SSF51735 6.4E-46 134 309 No hit NA Pfam PF00107 1.2E-23 168 301 IPR013149 Alcohol dehydrogenase, C-terminal