Basic information
Locus name	AT4G20460
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	NAD-dependent epimerase/dehydratase family protein; FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process cellular metabolic process galactose metabolic process molecular function UDP-glucose 4-epimerase activity catalytic activity coenzyme binding
Pathway	KEGG map00052 (EC 5.1.3.2) map00520 (EC 5.1.3.2) MetaCyc PWY-6317
Sequence	AT4G20460.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G20460.1  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -28.1 kcal/mol  p-value: 0.000204  position: 108  target 5' C                   C  3'             UUUCUUCUUCUUCUUC CG                 AAAGAAGAAGAAGAAG GU      miRNA  3' A                A     5'
Ortholog Group
Ortholog Groups: OG5_126853	Accession Taxon NP_001031118 Arabidopsis thaliana NP_001077632 Arabidopsis thaliana NP_001154259 ( AT4G20460 ) Arabidopsis thaliana NP_172738 Arabidopsis thaliana NP_174350 Arabidopsis thaliana NP_176625 Arabidopsis thaliana NP_192834 Arabidopsis thaliana NP_193779 Arabidopsis thaliana NP_194123 Arabidopsis thaliana NP_199261 Arabidopsis thaliana NP_564811 Arabidopsis thaliana CMA041C Cyanidioschyzon merolae strain 10D 139260 Chlamydomonas reinhardtii 205940 Chlamydomonas reinhardtii ACO64661 Micromonas sp. RCC299 ACO67283 Micromonas sp. RCC299 NP_001053890 Oryza sativa Japonica Group NP_001056512 Oryza sativa Japonica Group NP_001058859 Oryza sativa Japonica Group NP_001060917 Oryza sativa Japonica Group NP_001061668 Oryza sativa Japonica Group NP_001062869 Oryza sativa Japonica Group NP_001063727 Oryza sativa Japonica Group e_gw1.09.00.188.1 Ostreococcus tauri estExt_fgenesh1_pm.C_Chr_08.00010018 Ostreococcus tauri e_gw1.1.366.1 Physcomitrella patens subsp. patens e_gw1.165.101.1 Physcomitrella patens subsp. patens e_gw1.221.32.1 Physcomitrella patens subsp. patens e_gw1.59.257.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_2770040 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1330060 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1870002 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1010038 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_36000031 Physcomitrella patens subsp. patens 29776.m000489 Ricinus communis 30190.m010846 Ricinus communis e_gw1.7.210.1 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_50200 Thalassiosira pseudonana CCMP1335 XP_002947079 Volvox carteri f. nagariensis XP_002957530 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10366 2.5E-172 65 410 No hit NA SUPERFAMILY SSF51735 5.5E-84 71 408 No hit NA Pfam PF01370 3.0E-50 72 333 IPR001509 NAD-dependent epimerase/dehydratase TIGRFAM TIGR01179 1.8E-116 72 407 IPR005886 UDP-glucose 4-epimerase GalE Pfam PF13950 1.9E-17 346 408 IPR025308 UDP-glucose 4-epimerase C-terminal domain
Subcellular Localization
Localization	mitochondrion,golgi
Evidence	SUBAcon
Pubmed ID	23180787