Basic information
Locus name	AT3G63030
Alias	MBD4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	MBD4; FUNCTIONS IN: DNA demethylase activity, methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: MBD1; DNA binding / DNA demethylase/ methyl-CpG binding (TAIR:AT4G22745.1); Has 99 Blast hits to 98 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component nucleus molecular function DNA binding zinc ion binding
Sequence	AT3G63030.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_170597	Accession Taxon NP_191862 ( AT3G63030 ) Arabidopsis thaliana NP_567667 Arabidopsis thaliana NP_001055505 Oryza sativa Japonica Group NP_001055506 Oryza sativa Japonica Group 29703.m001533 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31231 1.9E-66 1 186 No hit NA ProSiteProfiles PS51050 12.2 22 77 IPR011124 Zinc finger, CW-type Pfam PF07496 1.5E-12 27 75 IPR011124 Zinc finger, CW-type SUPERFAMILY SSF54171 3.2E-24 65 170 IPR016177 DNA-binding, integrase-type ProSiteProfiles PS50982 15.5 83 153 IPR001739 Methyl-CpG DNA binding SMART SM00391 2.8E-22 85 158 IPR001739 Methyl-CpG DNA binding Pfam PF01429 8.5E-14 91 154 IPR001739 Methyl-CpG DNA binding
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787