Basic information
Locus name	AT4G34830
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	unknown protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT4G34830.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT4G34830.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -26.9 kcal/mol  p-value: 0.021927  position: 3067  target 5' A   U                G  3'             GGG CGGACAGGAAAUUGGU                 CUU GCUUGUUCUUUGACUA      miRNA  3' A   U                   5'
Ortholog Group
Ortholog Groups: OG5_152502	Accession Taxon NP_195209 ( AT4G34830 ) Arabidopsis thaliana 188949 Chlamydomonas reinhardtii ACO61700 Micromonas sp. RCC299 NP_001064251 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_06.00010075 Ostreococcus tauri estExt_fgenesh1_pg.C_700109 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_67000053 Physcomitrella patens subsp. patens 28208.m000061 Ricinus communis XP_002949152 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24015 6.7E-102 384 836 No hit NA ProSiteProfiles PS51375 8.3 466 500 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.3 468 497 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 0.0 469 502 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 11.4 501 535 IPR002885 Pentatricopeptide repeat Pfam PF13041 3.1E-11 504 549 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 1.9E-8 504 536 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.2 536 570 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 1.5E-4 538 571 IPR002885 Pentatricopeptide repeat Pfam PF13041 7.2E-10 570 621 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.1 571 605 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.6E-4 573 601 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.6 608 642 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.3E-5 612 641 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.9 643 677 IPR002885 Pentatricopeptide repeat Pfam PF01535 1.5E-4 646 675 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 1.8E-7 646 679 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 8.4 678 712 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.3 680 710 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 11.0 713 747 IPR002885 Pentatricopeptide repeat Pfam PF13041 2.2E-9 714 761 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 1.2E-5 715 742 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.3 748 782 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 2.5E-4 751 784 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 8.3 783 817 IPR002885 Pentatricopeptide repeat
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787