Basic information
Locus name	AT5G04360
Alias	ATLDA
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	LIMIT DEXTRINASE (ATLDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 3780 Blast hits to 3779 proteins in 911 species: Archae - 39; Bacteria - 3120; Metazoa - 44; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function catalytic activity cation binding hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT5G04360.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_137938	Accession Taxon NP_196056 ( AT5G04360 ) Arabidopsis thaliana CMP300C Cyanidioschyzon merolae strain 10D 17807 Chlamydomonas reinhardtii ACO64736 Micromonas sp. RCC299 NP_001052129 Oryza sativa Japonica Group 0100010303 Ostreococcus tauri estExt_fgenesh1_pg.C_1420048 Physcomitrella patens subsp. patens 29475.m000230 Ricinus communis XP_002954985 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF81296 8.4E-30 79 201 IPR014756 Immunoglobulin E-set TIGRFAM TIGR02103 0.0 84 963 IPR011839 Alpha-1,6-glucosidases, pullulanase-type PANTHER PTHR10357 0.0 121 964 IPR015902 Glycoside hydrolase, family 13 SUPERFAMILY SSF81296 4.2E-23 200 311 IPR014756 Immunoglobulin E-set Pfam PF02922 4.6E-14 207 292 IPR004193 Glycoside hydrolase, family 13, N-terminal SUPERFAMILY SSF51445 3.1E-122 305 851 IPR017853 Glycoside hydrolase, superfamily Pfam PF00128 3.0E-8 460 768 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Pfam PF11852 2.3E-60 791 962 IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal SUPERFAMILY SSF51011 3.3E-31 854 964 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787