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About
Basic information
Locus name
AT5G25930
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Others
Effect for Senescence
unclear
Gene Description
leucine-rich repeat family protein; FUNCTIONS IN: protein binding;
Evidence
Genomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94
Gene Ontology
biological process
protein phosphorylation
molecular function
ATP binding
protein binding
protein kinase activity
protein serine/threonine kinase activity
Sequence
AT5G25930.1 |
Genomic
|
mRNA
|
CDS
|
Protein
miRNA Interaction
Details
target: AT5G25930.1
miRNA:
ath-miR837-5p
miRNA:
ath-miR837-5p
mfe: -27.6 kcal/mol
p-value: 0.015125
position: 2232
target 5' A A 3'
UGGGAC AGCAAGAAACUGG
ACUUUG UUGUUCUUUGACU
miRNA 3' C A 5'
Ortholog Group
Ortholog Groups:
OG5_127136
Accession
Taxon
NP_001032080
Arabidopsis thaliana
NP_001117501
Arabidopsis thaliana
NP_001117591
Arabidopsis thaliana
NP_172335
Arabidopsis thaliana
NP_172468
Arabidopsis thaliana
NP_173166
Arabidopsis thaliana
NP_173217
Arabidopsis thaliana
NP_174166
Arabidopsis thaliana
NP_174673
Arabidopsis thaliana
NP_174809
Arabidopsis thaliana
NP_175957
Arabidopsis thaliana
NP_177363
Arabidopsis thaliana
NP_177451
Arabidopsis thaliana
NP_177710
Arabidopsis thaliana
NP_178304
Arabidopsis thaliana
NP_180875
Arabidopsis thaliana
NP_187946
Arabidopsis thaliana
NP_188604
Arabidopsis thaliana
NP_189066
Arabidopsis thaliana
NP_190536
Arabidopsis thaliana
NP_192625
Arabidopsis thaliana
NP_193747
Arabidopsis thaliana
NP_193760
Arabidopsis thaliana
NP_194578
Arabidopsis thaliana
NP_194594
Arabidopsis thaliana
NP_195650
Arabidopsis thaliana
NP_196345
Arabidopsis thaliana
NP_197965
( AT5G25930 )
Arabidopsis thaliana
NP_199283
Arabidopsis thaliana
NP_199705
Arabidopsis thaliana
NP_199777
Arabidopsis thaliana
NP_199948
Arabidopsis thaliana
NP_200415
Arabidopsis thaliana
NP_200956
Arabidopsis thaliana
NP_201198
Arabidopsis thaliana
NP_201371
Arabidopsis thaliana
NP_201372
Arabidopsis thaliana
NP_567748
Arabidopsis thaliana
NP_849538
Arabidopsis thaliana
NP_850942
Arabidopsis thaliana
120925
Chlamydomonas reinhardtii
ACO66850
Micromonas sp. RCC299
NP_001042139
Oryza sativa Japonica Group
NP_001042546
Oryza sativa Japonica Group
NP_001044077
Oryza sativa Japonica Group
NP_001044213
Oryza sativa Japonica Group
NP_001044979
Oryza sativa Japonica Group
NP_001045202
Oryza sativa Japonica Group
NP_001045656
Oryza sativa Japonica Group
NP_001046354
Oryza sativa Japonica Group
NP_001046355
Oryza sativa Japonica Group
NP_001047110
Oryza sativa Japonica Group
NP_001048946
Oryza sativa Japonica Group
NP_001049453
Oryza sativa Japonica Group
NP_001051418
Oryza sativa Japonica Group
NP_001052097
Oryza sativa Japonica Group
NP_001054764
Oryza sativa Japonica Group
NP_001054768
Oryza sativa Japonica Group
NP_001056517
Oryza sativa Japonica Group
NP_001057858
Oryza sativa Japonica Group
NP_001057860
Oryza sativa Japonica Group
NP_001057964
Oryza sativa Japonica Group
NP_001058593
Oryza sativa Japonica Group
NP_001058840
Oryza sativa Japonica Group
NP_001058906
Oryza sativa Japonica Group
NP_001059710
Oryza sativa Japonica Group
NP_001061677
Oryza sativa Japonica Group
NP_001061926
Oryza sativa Japonica Group
NP_001062124
Oryza sativa Japonica Group
NP_001062792
Oryza sativa Japonica Group
NP_001062883
Oryza sativa Japonica Group
NP_001064047
Oryza sativa Japonica Group
NP_001064062
Oryza sativa Japonica Group
NP_001064813
Oryza sativa Japonica Group
NP_001064816
Oryza sativa Japonica Group
NP_001064819
Oryza sativa Japonica Group
NP_001065120
Oryza sativa Japonica Group
NP_001067347
Oryza sativa Japonica Group
NP_001067348
Oryza sativa Japonica Group
NP_001067561
Oryza sativa Japonica Group
NP_001067562
Oryza sativa Japonica Group
e_gw1.11.00.101.1
Ostreococcus tauri
e_gw1.14.30.1
Physcomitrella patens subsp. patens
e_gw1.14.67.1
Physcomitrella patens subsp. patens
e_gw1.161.14.1
Physcomitrella patens subsp. patens
e_gw1.172.6.1
Physcomitrella patens subsp. patens
e_gw1.182.5.1
Physcomitrella patens subsp. patens
e_gw1.244.2.1
Physcomitrella patens subsp. patens
e_gw1.281.94.1
Physcomitrella patens subsp. patens
e_gw1.5.384.1
Physcomitrella patens subsp. patens
estExt_Genewise1.C_1110048
Physcomitrella patens subsp. patens
estExt_Genewise1.C_680049
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1780069
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2120003
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_480110
Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_247000007
Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_63000078
Physcomitrella patens subsp. patens
gw1.102.8.1
Physcomitrella patens subsp. patens
27837.m000161
Ricinus communis
27893.m000225
Ricinus communis
27956.m000355
Ricinus communis
27985.m000860
Ricinus communis
28644.m000896
Ricinus communis
28830.m000232
Ricinus communis
28830.m000234
Ricinus communis
28966.m000525
Ricinus communis
29592.m000104
Ricinus communis
29637.m000755
Ricinus communis
29666.m001469
Ricinus communis
29680.m001721
Ricinus communis
29680.m001748
Ricinus communis
29737.m001253
Ricinus communis
29765.m000745
Ricinus communis
29780.m001387
Ricinus communis
29794.m003413
Ricinus communis
29904.m002997
Ricinus communis
29904.m003011
Ricinus communis
29908.m006021
Ricinus communis
29912.m005436
Ricinus communis
29983.m003126
Ricinus communis
30074.m001369
Ricinus communis
30099.m001625
Ricinus communis
30147.m013904
Ricinus communis
30147.m013919
Ricinus communis
30147.m014235
Ricinus communis
30147.m014245
Ricinus communis
30147.m014283
Ricinus communis
30158.m000501
Ricinus communis
30170.m013627
Ricinus communis
30170.m013628
Ricinus communis
30170.m013629
Ricinus communis
30170.m014376
Ricinus communis
30190.m011299
Ricinus communis
30204.m001801
Ricinus communis
51128.m000015
Ricinus communis
estExt_thaps1_ua_kg.C_chr_40298
Thalassiosira pseudonana CCMP1335
XP_002948176
Volvox carteri f. nagariensis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
Pfam
PF08263
5.8E-7
26
60
IPR013210
Leucine-rich repeat-containing N-terminal, type 2
SUPERFAMILY
SSF52047
5.9E-54
42
343
No hit
NA
PANTHER
PTHR24420
1.3E-283
69
966
No hit
NA
SMART
SM00369
270.0
86
110
IPR003591
Leucine-rich repeat, typical subtype
SMART
SM00369
410.0
111
134
IPR003591
Leucine-rich repeat, typical subtype
Pfam
PF00560
0.6
112
133
IPR001611
Leucine-rich repeat
Pfam
PF13855
1.3E-7
211
271
No hit
NA
SMART
SM00369
58.0
234
258
IPR003591
Leucine-rich repeat, typical subtype
SUPERFAMILY
SSF52047
2.4E-57
251
603
No hit
NA
Pfam
PF12799
1.9E-8
282
319
IPR025875
Leucine rich repeat 4
SMART
SM00369
15.0
305
329
IPR003591
Leucine-rich repeat, typical subtype
SMART
SM00369
230.0
495
519
IPR003591
Leucine-rich repeat, typical subtype
Pfam
PF13516
0.8
520
541
No hit
NA
SMART
SM00369
41.0
543
567
IPR003591
Leucine-rich repeat, typical subtype
SUPERFAMILY
SSF56112
2.8E-72
680
964
IPR011009
Protein kinase-like domain
ProSiteProfiles
PS50011
36.7
685
969
IPR000719
Protein kinase, catalytic domain
SMART
SM00220
1.0E-28
685
969
IPR002290
Serine/threonine- / dual specificity protein kinase, catalytic domain
Pfam
PF00069
1.8E-49
690
961
IPR000719
Protein kinase, catalytic domain
ProSitePatterns
PS00107
NA
691
714
IPR017441
Protein kinase, ATP binding site
ProSitePatterns
PS00108
NA
815
827
IPR008271
Serine/threonine-protein kinase, active site
Subcellular Localization
Localization
plasma membrane
Evidence
SUBAcon
Pubmed ID
23180787