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About
Basic information   
Locus name AT4G20380
AliasLSD1
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene DescriptionLESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 234 Blast hits to 192 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

SequenceAT4G20380.1 | Genomic | mRNA | CDS | Protein
AT4G20380.2 | Genomic | mRNA | CDS | Protein
AT4G20380.3 | Genomic | mRNA | CDS | Protein
AT4G20380.4 | Genomic | mRNA | CDS | Protein
AT4G20380.5 | Genomic | mRNA | CDS | Protein
AT4G20380.6 | Genomic | mRNA | CDS | Protein
AT4G20380.7 | Genomic | mRNA | CDS | Protein
AT4G20380.8 | Genomic | mRNA | CDS | Protein
Ortholog Group      
Ortholog Groups: OG5_137522
AccessionTaxon
NP_001031678Arabidopsis thaliana
NP_001031679Arabidopsis thaliana
NP_001031680Arabidopsis thaliana
NP_001078413Arabidopsis thaliana
NP_001154257 ( AT4G20380 ) Arabidopsis thaliana
NP_567599Arabidopsis thaliana
NP_849548Arabidopsis thaliana
NP_849549Arabidopsis thaliana
CMI013CCyanidioschyzon merolae strain 10D
205637Chlamydomonas reinhardtii
NP_001050737Oryza sativa Japonica Group
NP_001067250Oryza sativa Japonica Group
estExt_gwp_gw1.C_110052Physcomitrella patens subsp. patens
gw1.75.67.1Physcomitrella patens subsp. patens
29827.m002550Ricinus communis
XP_002947922Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR317471.2E-991210No hitNA
TIGRFAMTIGR010531.6E-19434IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-14731IPR005735Zinc finger, LSD1-type
TIGRFAMTIGR010532.3E-184575IPR005735Zinc finger, LSD1-type
PfamPF069433.2E-124871IPR005735Zinc finger, LSD1-type
TIGRFAMTIGR010539.1E-14118148IPR005735Zinc finger, LSD1-type
PfamPF069433.4E-13121145IPR005735Zinc finger, LSD1-type
Subcellular Localization   
Localizationextracellular
EvidenceSUBAcon
Pubmed ID23180787