Basic information
Locus name	AT5G56140
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G26480.1); Has 4346 Blast hits to 2291 proteins in 261 species: Archae - 6; Bacteria - 444; Metazoa - 2561; Fungi - 214; Plants - 674; Viruses - 13; Other Eukaryotes - 434 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function RNA binding
Sequence	AT5G56140.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_130594	Accession Taxon NP_172437 Arabidopsis thaliana NP_181395 Arabidopsis thaliana NP_187474 Arabidopsis thaliana NP_194378 Arabidopsis thaliana NP_200425 ( AT5G56140 ) Arabidopsis thaliana NP_850296 Arabidopsis thaliana NP_973800 Arabidopsis thaliana CMA075C Cyanidioschyzon merolae strain 10D NP_001045029 Oryza sativa Japonica Group NP_001047968 Oryza sativa Japonica Group NP_001051685 Oryza sativa Japonica Group NP_001055572 Oryza sativa Japonica Group NP_001059216 Oryza sativa Japonica Group estExt_Genewise1.C_2260018 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_2690009 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_680211 Physcomitrella patens subsp. patens 28128.m000156 Ricinus communis 29765.m000727 Ricinus communis 29945.m000086 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11208 2.9E-102 1 297 No hit NA SMART SM00322 2.5E-6 164 257 IPR004087 K Homology domain SUPERFAMILY SSF54791 5.5E-29 169 289 No hit NA
Subcellular Localization
Localization	cytosol,plastid
Evidence	SUBAcon
Pubmed ID	23180787