Basic information
Locus name	AT4G38940
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G10510.1); Has 722 Blast hits to 701 proteins in 54 species: Archae - 4; Bacteria - 27; Metazoa - 128; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT4G38940.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_164385	Accession Taxon NP_187662 Arabidopsis thaliana NP_189429 Arabidopsis thaliana NP_195605 ( AT4G38940 ) Arabidopsis thaliana NP_195635 Arabidopsis thaliana NP_849387 Arabidopsis thaliana NP_974550 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32188 2.6E-59 6 370 No hit NA SUPERFAMILY SSF81383 9.8E-9 13 93 IPR001810 F-box domain, cyclin-like ProSiteProfiles PS50181 10.7 18 64 IPR001810 F-box domain, cyclin-like Pfam PF00646 3.8E-7 21 64 IPR001810 F-box domain, cyclin-like SMART SM00256 3.0E-7 24 64 IPR001810 F-box domain, cyclin-like SUPERFAMILY SSF117281 2.0E-35 71 356 No hit NA Pfam PF13964 1.4E-6 120 165 No hit NA
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787