Basic information
Locus name	AT3G15730
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism:Lipid metabolism
Effect for Senescence	Unclear
Gene Description	Phospholipase D putative. Upregulated in senescent leaves.
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	biological process metabolic process phosphatidylcholine metabolic process cellular component membrane molecular function calcium ion binding catalytic activity phospholipase D activity protein binding
Pathway	KEGG map00564 (EC 3.1.4.4) map00565 (EC 3.1.4.4) MetaCyc PWY-3561
Sequence	AT3G15730.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G15730.1  miRNA: ath-miR1886 miRNA: ath-miR1886 mfe: -21.7 kcal/mol  p-value: 0.047136  position:  476  target 5' C      U         G   A 3'             AGUGGG UGAGAUCUU GAU              UCAUUC ACUUUAGAA UUA   miRNA  3'        U         A   A 5'
Ortholog Group
Ortholog Groups: OG5_131416	Accession Taxon NP_175666 Arabidopsis thaliana NP_175914 Arabidopsis thaliana NP_188194 ( AT3G15730 ) Arabidopsis thaliana NP_192920 Arabidopsis thaliana NP_192921 Arabidopsis thaliana NP_192922 Arabidopsis thaliana NP_197919 Arabidopsis thaliana NP_565963 Arabidopsis thaliana NP_567160 Arabidopsis thaliana NP_567989 Arabidopsis thaliana NP_849501 Arabidopsis thaliana NP_849502 Arabidopsis thaliana NP_849539 Arabidopsis thaliana NP_001042153 Oryza sativa Japonica Group NP_001048777 Oryza sativa Japonica Group NP_001051849 Oryza sativa Japonica Group NP_001054773 Oryza sativa Japonica Group NP_001058015 Oryza sativa Japonica Group NP_001058016 Oryza sativa Japonica Group NP_001058017 Oryza sativa Japonica Group NP_001059324 Oryza sativa Japonica Group NP_001063203 Oryza sativa Japonica Group NP_001063826 Oryza sativa Japonica Group NP_001065108 Oryza sativa Japonica Group e_gw1.19.181.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_80143 Physcomitrella patens subsp. patens estExt_Genewise1.C_940006 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_580068 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_100017 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_360039 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_20288 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3240023 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_165000063 Physcomitrella patens subsp. patens 28320.m001141 Ricinus communis 28694.m000682 Ricinus communis 28725.m000311 Ricinus communis 29784.m000369 Ricinus communis 29841.m002847 Ricinus communis 29848.m004631 Ricinus communis 30170.m014290 Ricinus communis 30174.m008942 Ricinus communis 30190.m011102 Ricinus communis thaps1_ua_kg.chr_3000222 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF036470 0.0 1 810 IPR011402 Phospholipase D, plant SUPERFAMILY SSF49562 7.5E-20 6 151 IPR008973 C2 calcium/lipid-binding domain, CaLB SMART SM00239 6.6E-13 9 125 IPR000008 C2 calcium-dependent membrane targeting Pfam PF00168 5.3E-12 13 109 IPR000008 C2 calcium-dependent membrane targeting PANTHER PTHR18896 0.0 27 803 IPR015679 Phospholipase D family SUPERFAMILY SSF56024 2.6E-36 154 373 No hit NA Pfam PF00614 3.4E-12 327 366 IPR001736 Phospholipase D/Transphosphatidylase ProSiteProfiles PS50035 11.2 327 366 IPR001736 Phospholipase D/Transphosphatidylase SMART SM00155 1.6E-4 327 366 IPR001736 Phospholipase D/Transphosphatidylase SUPERFAMILY SSF56024 2.6E-36 402 443 No hit NA SUPERFAMILY SSF56024 2.2E-29 488 606 No hit NA SUPERFAMILY SSF56024 2.2E-29 652 740 No hit NA ProSiteProfiles PS50035 15.4 656 683 IPR001736 Phospholipase D/Transphosphatidylase SMART SM00155 1.1E-8 656 683 IPR001736 Phospholipase D/Transphosphatidylase Pfam PF00614 4.6E-8 657 683 IPR001736 Phospholipase D/Transphosphatidylase Pfam PF12357 7.6E-31 727 801 IPR024632 Phospholipase D, C-terminal
Subcellular Localization
Localization 1 Localization mitochondria Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787