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| Locus name | AT4G15610 |
| Organism | Arabidopsis thaliana | | Taxonomic identifier | [NCBI] | | Function category | Others | | Effect for Senescence | unclear | | Gene Description | integral membrane family protein; | | Evidence | Genomic evidence:microarray data [Ref 1] | | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | | Sequence | AT4G15610.1 | Genomic | mRNA | CDS | Protein
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| | Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) | | Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
| | Details | | target: AT4G15610.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -37.6 kcal/mol
p-value: 0.000444
position: 626
target 5' C A U 3'
CUCCUCCU CCUAUCC UCAUC
GAGGAGGA GGAUAGG AGUAG
miRNA 3' G 5'
target: AT4G15610.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -37.6 kcal/mol
p-value: 0.000205
position: 626
target 5' C A U 3'
CUCCUCCU CCUAUCC UCAUC
GAGGAGGA GGAUAGG AGUAG
miRNA 3' G 5'
target: AT4G15610.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -37.6 kcal/mol
p-value: 0.000166
position: 626
target 5' C A U 3'
CUCCUCCU CCUAUCC UCAUC
GAGGAGGA GGAUAGG AGUAG
miRNA 3' G 5'
target: AT4G15610.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -37.6 kcal/mol
p-value: 0.000370
position: 626
target 5' C A U 3'
CUCCUCCU CCUAUCC UCAUC
GAGGAGGA GGAUAGG AGUAG
miRNA 3' G 5'
target: AT4G15610.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -37.6 kcal/mol
p-value: 0.000100
position: 626
target 5' C A U 3'
CUCCUCCU CCUAUCC UCAUC
GAGGAGGA GGAUAGG AGUAG
miRNA 3' G 5'
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| Ortholog Group | |
| | Ortholog Groups: OG5_177788 | |
| Cross Link | |
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| | Localization | vacuole,plasma membrane | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
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