Basic information
Locus name	AT1G30460
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Cell wall
Effect for Senescence	Unclear
Gene Description	Glycine rich protein. Upregulated in senescent leaves.
Evidence	Molecular evidence: SSH and Northern [Ref 1]
References	1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani M Large-scale identification of leaf senescence-associated genes. Plant J. 2003 Dec;36(5):629-42
Gene Ontology	molecular function nucleic acid binding zinc ion binding
Sequence	AT1G30460.1 | Genomic | mRNA | CDS | Protein AT1G30460.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G30460.1  miRNA: ath-miR844 miRNA: ath-miR844 mfe: -23.4 kcal/mol  p-value: 0.022589  position:  1214  target 5' G                     U 3'             AGCUUAU GGCAAUC U CCA              UCGAAUA UCGUUAG A GGU   miRNA  3'         U       A U     5'  target: AT1G30460.1  miRNA: ath-miR866-3p miRNA: ath-miR866-3p mfe: -21.7 kcal/mol  p-value: 0.067653  position:  108  target 5' A              C   A 3'             UUUCGAAGGCGG U UUG              GAAGUUUCUGCC A AAC   miRNA  3' A            U A   A 5'  target: AT1G30460.2  miRNA: ath-miR866-3p miRNA: ath-miR866-3p mfe: -21.7 kcal/mol  p-value: 0.017261  position:  29  target 5' A              C   A 3'             UUUCGAAGGCGG U UUG              GAAGUUUCUGCC A AAC   miRNA  3' A            U A   A 5'
Ortholog Group
Ortholog Groups: OG5_137714	Accession Taxon NP_174334 ( AT1G30460 ) Arabidopsis thaliana NP_001058359 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_90259 Physcomitrella patens subsp. patens 30075.m001190 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS50103 13.8 60 87 IPR000571 Zinc finger, CCCH-type SMART SM00356 3.9E-5 60 86 IPR000571 Zinc finger, CCCH-type PANTHER PTHR23102 3.8E-170 61 287 No hit NA SUPERFAMILY SSF90229 4.2E-6 62 85 No hit NA ProSiteProfiles PS50103 7.8 88 112 IPR000571 Zinc finger, CCCH-type SMART SM00356 0.5 88 114 IPR000571 Zinc finger, CCCH-type ProSiteProfiles PS50103 12.5 114 141 IPR000571 Zinc finger, CCCH-type SMART SM00356 0.0 116 140 IPR000571 Zinc finger, CCCH-type Pfam PF04146 2.7E-48 237 372 IPR007275 YTH domain ProSiteProfiles PS50882 62.3 237 372 IPR007275 YTH domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787