Basic information
Locus name	AT5G54680
Alias	ILR3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway
Effect for Senescence	unclear
Gene Description	iaa-leucine resistant3 (ILR3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G51070.1); Has 563 Blast hits to 555 proteins in 74 species: Archae - 4; Bacteria - 10; Metazoa - 69; Fungi - 13; Plants - 431; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein dimerization activity
Sequence	AT5G54680.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_147273	Accession Taxon NP_200279 ( AT5G54680 ) Arabidopsis thaliana ACO66693 Micromonas sp. RCC299 NP_001045680 Oryza sativa Japonica Group NP_001059905 Oryza sativa Japonica Group NP_001060960 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_14.0001000151 Ostreococcus tauri e_gw1.229.33.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2460032 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_13000185 Physcomitrella patens subsp. patens 28166.m001054 Ricinus communis 29842.m003681 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23042 2.8E-90 1 160 No hit NA SUPERFAMILY SSF47459 10.0E-14 62 137 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain ProSiteProfiles PS50888 13.5 71 122 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain Pfam PF00010 1.7E-9 75 122 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SMART SM00353 1.3E-9 77 128 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain Coils Coil NA 119 175 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787