Basic information
Locus name	AT2G39050
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification
Effect for Senescence	unclear
Gene Description	hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772); Has 1440 Blast hits to 1210 proteins in 180 species: Archae - 0; Bacteria - 37; Metazoa - 486; Fungi - 318; Plants - 469; Viruses - 5; Other Eukaryotes - 125 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT2G39050.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_150392	Accession Taxon NP_565899 ( AT2G39050 ) Arabidopsis thaliana NP_001041764 Oryza sativa Japonica Group NP_001049995 Oryza sativa Japonica Group NP_001060666 Oryza sativa Japonica Group NP_001060667 Oryza sativa Japonica Group NP_001060668 Oryza sativa Japonica Group e_gw1.5.260.1 Physcomitrella patens subsp. patens e_gw1.6.339.1 Physcomitrella patens subsp. patens e_gw1.74.227.1 Physcomitrella patens subsp. patens 29950.m001172 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31257 1.6E-149 2 317 No hit NA SUPERFAMILY SSF50370 2.2E-22 164 316 IPR000772 Ricin B lectin domain ProSiteProfiles PS50231 8.9 185 315 IPR000772 Ricin B lectin domain Pfam PF14200 3.9E-16 211 314 IPR000772 Ricin B lectin domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787