Basic information
Locus name	AT4G40030
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process nucleosome assembly cellular component nucleosome molecular function DNA binding
Sequence	AT4G40030.1 | Genomic | mRNA | CDS | Protein AT4G40030.2 | Genomic | mRNA | CDS | Protein AT4G40030.3 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126569	Accession Taxon NP_001031816 Arabidopsis thaliana NP_001078516 ( AT4G40030 ) Arabidopsis thaliana NP_001078517 Arabidopsis thaliana NP_177690 Arabidopsis thaliana NP_189372 Arabidopsis thaliana NP_195713 Arabidopsis thaliana NP_196659 Arabidopsis thaliana NP_201338 Arabidopsis thaliana NP_201339 Arabidopsis thaliana NP_563838 Arabidopsis thaliana NP_568227 Arabidopsis thaliana NP_568228 Arabidopsis thaliana NP_849529 Arabidopsis thaliana CMN165C Cyanidioschyzon merolae strain 10D CMN176C Cyanidioschyzon merolae strain 10D 100021 Chlamydomonas reinhardtii 112300 Chlamydomonas reinhardtii 112631 Chlamydomonas reinhardtii 114955 Chlamydomonas reinhardtii 123665 Chlamydomonas reinhardtii 155704 Chlamydomonas reinhardtii 156530 Chlamydomonas reinhardtii 167003 Chlamydomonas reinhardtii 167030 Chlamydomonas reinhardtii 167094 Chlamydomonas reinhardtii 167194 Chlamydomonas reinhardtii 167230 Chlamydomonas reinhardtii 169652 Chlamydomonas reinhardtii 170323 Chlamydomonas reinhardtii 177149 Chlamydomonas reinhardtii 178494 Chlamydomonas reinhardtii 178537 Chlamydomonas reinhardtii 181270 Chlamydomonas reinhardtii 184 Chlamydomonas reinhardtii 221 Chlamydomonas reinhardtii 243 Chlamydomonas reinhardtii 24435 Chlamydomonas reinhardtii 255 Chlamydomonas reinhardtii 580 Chlamydomonas reinhardtii 581 Chlamydomonas reinhardtii 63 Chlamydomonas reinhardtii 642 Chlamydomonas reinhardtii 798 Chlamydomonas reinhardtii 811 Chlamydomonas reinhardtii 823 Chlamydomonas reinhardtii 844 Chlamydomonas reinhardtii 849 Chlamydomonas reinhardtii 869 Chlamydomonas reinhardtii 88 Chlamydomonas reinhardtii 916 Chlamydomonas reinhardtii 97639 Chlamydomonas reinhardtii 97703 Chlamydomonas reinhardtii NP_113256 Guillardia theta ACO63862 Micromonas sp. RCC299 ACO70266 Micromonas sp. RCC299 NP_001044904 Oryza sativa Japonica Group NP_001050276 Oryza sativa Japonica Group NP_001052776 Oryza sativa Japonica Group NP_001055660 Oryza sativa Japonica Group NP_001056693 Oryza sativa Japonica Group NP_001056877 Oryza sativa Japonica Group NP_001065791 Oryza sativa Japonica Group e_gw1.11.00.328.1 Ostreococcus tauri estExt_fgenesh1_pm.C_Chr_08.00010003 Ostreococcus tauri fgenesh1_pm.C_Chr_05.0001000054 Ostreococcus tauri e_gw1.156.103.1 Physcomitrella patens subsp. patens e_gw1.3.269.1 Physcomitrella patens subsp. patens e_gw1.3.270.1 Physcomitrella patens subsp. patens e_gw1.540.11.1 Physcomitrella patens subsp. patens e_gw1.9.171.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_30440 Physcomitrella patens subsp. patens estExt_Genewise1.C_350133 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_960061 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_160014 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_12000043 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_164000003 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_410000004 Physcomitrella patens subsp. patens 28623.m000401 Ricinus communis 29810.m000137 Ricinus communis 29810.m000140 Ricinus communis 29810.m000142 Ricinus communis 29810.m000143 Ricinus communis 29900.m001544 Ricinus communis 29908.m006071 Ricinus communis 30051.m000524 Ricinus communis 30170.m014142 Ricinus communis 30170.m014143 Ricinus communis e_gw1.12.208.1 Thalassiosira pseudonana CCMP1335 e_gw1.14.268.1 Thalassiosira pseudonana CCMP1335 e_gw1.7.488.1 Thalassiosira pseudonana CCMP1335 e_gw1.7.493.1 Thalassiosira pseudonana CCMP1335 estExt_Genewise1.C_chr_140052 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_3000117 Thalassiosira pseudonana CCMP1335 fgenesh1_pm.C_chr_7000024 Thalassiosira pseudonana CCMP1335 XP_002946112 Volvox carteri f. nagariensis XP_002946114 Volvox carteri f. nagariensis XP_002947277 Volvox carteri f. nagariensis XP_002947411 Volvox carteri f. nagariensis XP_002947524 Volvox carteri f. nagariensis XP_002947836 Volvox carteri f. nagariensis XP_002953084 Volvox carteri f. nagariensis XP_002953085 Volvox carteri f. nagariensis XP_002956797 Volvox carteri f. nagariensis XP_002956851 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11426 6.2E-139 1 136 IPR000164 Histone H3 SUPERFAMILY SSF47113 5.3E-57 2 133 IPR009072 Histone-fold PRINTS PR00622 4.3E-85 3 17 IPR000164 Histone H3 ProSitePatterns PS00322 NA 15 21 IPR000164 Histone H3 PRINTS PR00622 4.3E-85 17 31 IPR000164 Histone H3 PRINTS PR00622 4.3E-85 34 55 IPR000164 Histone H3 SMART SM00428 1.1E-74 34 136 IPR000164 Histone H3 Pfam PF00125 3.3E-33 58 132 IPR007125 Histone core PRINTS PR00622 4.3E-85 58 75 IPR000164 Histone H3 ProSitePatterns PS00959 NA 67 75 IPR000164 Histone H3 PRINTS PR00622 4.3E-85 80 98 IPR000164 Histone H3 PRINTS PR00622 4.3E-85 98 114 IPR000164 Histone H3 PRINTS PR00622 4.3E-85 114 135 IPR000164 Histone H3
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787